View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18828_low_1 (Length: 631)
Name: NF18828_low_1
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18828_low_1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 42393448 - 42394061
Alignment:
| Q |
18 |
acaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggtgcaaacgaagggtttct |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42393448 |
acaagacccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgagacattagaagtggaagtgatgggtgcaaacgaagggtttct |
42393547 |
T |
|
| Q |
118 |
ttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393548 |
ttcattactgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctca |
42393647 |
T |
|
| Q |
218 |
ttactcctggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393648 |
ttactcctggtttgttcatcatttctgccattgcaaattcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaactcaa |
42393747 |
T |
|
| Q |
318 |
tggtattaagttcttcaacacgtgccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaataaaccatatgccgcnnnnnn |
417 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
42393748 |
tggtattaagttcttcaacgcacgccttagggcacatgttagcattctcaaataaattttaatttgaatcagagttaaacaaaccatataccgcaaaaaa |
42393847 |
T |
|
| Q |
418 |
nngtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcc |
517 |
Q |
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| T |
42393848 |
aagtgagaagacgctaaacataaatgtgtaacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcc |
42393947 |
T |
|
| Q |
518 |
tccttcaaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393948 |
tccttcaaattcaacaaaaactgcaaaaaatccttactttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattc |
42394047 |
T |
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| Q |
618 |
catcaaaacgaggc |
631 |
Q |
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|||||||||||||| |
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| T |
42394048 |
catcaaaacgaggc |
42394061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 313
Target Start/End: Original strand, 42387252 - 42387539
Alignment:
| Q |
25 |
ccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggtgcaaacgaagggtttctttcatta |
124 |
Q |
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|||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42387252 |
ccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgttgggtgcaaacgaagggtttctttcatta |
42387351 |
T |
|
| Q |
125 |
ctgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcc |
224 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
42387352 |
ctgcttgcaagtagggtagcttttgaatatgagactcttctactaagttatctttcccaaccacgatttccagttcctcttgaaccttcctcattacttc |
42387451 |
T |
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| Q |
225 |
tggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgttcatacaaac |
313 |
Q |
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||| |||| |||||||| ||| ||| ||||||||| || ||||||||||||||||||||||| | |||||||||||||||||| |||| |
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| T |
42387452 |
tgg-ttgtccatcatttatgctattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgttcatataaac |
42387539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 42376903 - 42377182
Alignment:
| Q |
25 |
ccctttggaattgtgtagcctcctacgttggtggtttcacttgggcaatgaggcattagaagtggaagtgatgggtgcaaacgaagggtttctttcatta |
124 |
Q |
| |
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|||| |||||||||||||||||| | ||||||||||||||||||||| ||||| | || ||||||||||| ||||| |||||||| ||||||||||| | |
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| T |
42376903 |
ccctctggaattgtgtagcctccaatgttggtggtttcacttgggcagtgagggactaaaagtggaagtgcagggtgtaaacgaagagtttctttcatca |
42377002 |
T |
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| Q |
125 |
ctgcttgcaagtagggtagcttgtgaatatgagactcttctactaagttatctttcccaaccactgcttccaattcctcttgaaccttcctcattactcc |
224 |
Q |
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|||| || ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||||||| ||| | |
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| T |
42377003 |
ctgcatgtaagtaggttagcttgtgaatatgagactcttctactaagttatcttttccaaccacagtttctaactcctcttgaaccttcctcatcacttc |
42377102 |
T |
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| Q |
225 |
tggtttgttcatcatttctgccattgcaaactcaacggtattggaggatgtgtctgatccaccaagtaccatgtcctgtt |
304 |
Q |
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||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| | |||||||||||||| |
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| T |
42377103 |
tggtttgttcatcatttctgccattacaaactcaattgtgttggaggatgtgtctgatccacccactaccatgtcctgtt |
42377182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 447 - 631
Target Start/End: Original strand, 42377959 - 42378146
Alignment:
| Q |
447 |
aacaaaggtagcataccaggagaagagccttcacgtgggtgcttgtgaatggtgtcttggaatcaccttcctccttcaaattcaacaaaaactgcaaaaa |
546 |
Q |
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|||||| ||||||||||| ||| |||||||| || || || |||| || |||||||| |||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42377959 |
aacaaaagtagcataccatgagtagagccttaacatgagtatttgtaaacggtgtcttagaatcaccctcctccttcaaattcaacaaaaactgcagaaa |
42378058 |
T |
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| Q |
547 |
atccttact---ttcactctcctttccttctacatccttcaccattcgttcaccaatcatcttttcaaatattccatcaaaacgaggc |
631 |
Q |
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||| |||| | | ||||||| || || | |||||| || |||||||||||||||||| |||||||| |||||||| |||||| |
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| T |
42378059 |
gtccctactcccattattctccttcccatcctcttccttcttcaatcgttcaccaatcatcttctcaaatatcccatcaaagcgaggc |
42378146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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