View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18828_low_2 (Length: 276)

Name: NF18828_low_2
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18828_low_2
NF18828_low_2
[»] chr2 (8 HSPs)
chr2 (1-261)||(16286003-16286263)
chr2 (180-275)||(30283391-30283486)
chr2 (197-275)||(42780341-42780419)
chr2 (182-276)||(45120554-45120648)
chr2 (182-276)||(17720469-17720563)
chr2 (182-275)||(716422-716515)
chr2 (182-276)||(14917325-14917419)
chr2 (189-274)||(20892300-20892384)
[»] chr4 (16 HSPs)
chr4 (1-165)||(50166952-50167117)
chr4 (182-276)||(54859120-54859215)
chr4 (182-276)||(34279456-34279550)
chr4 (182-274)||(3409551-3409643)
chr4 (197-276)||(34128218-34128297)
chr4 (182-276)||(18670997-18671091)
chr4 (182-275)||(30019791-30019883)
chr4 (215-276)||(32429269-32429330)
chr4 (182-276)||(35091082-35091176)
chr4 (182-276)||(35096195-35096289)
chr4 (215-275)||(14643721-14643781)
chr4 (227-274)||(3424698-3424745)
chr4 (193-276)||(22118872-22118957)
chr4 (199-262)||(34601998-34602061)
chr4 (196-276)||(25618264-25618337)
chr4 (243-275)||(47071553-47071585)
[»] chr1 (16 HSPs)
chr1 (182-275)||(19310981-19311074)
chr1 (184-274)||(13654478-13654568)
chr1 (182-276)||(21431624-21431719)
chr1 (193-275)||(10186535-10186617)
chr1 (193-275)||(44523985-44524069)
chr1 (195-275)||(16051353-16051433)
chr1 (182-276)||(3468235-3468329)
chr1 (182-276)||(28574464-28574558)
chr1 (182-276)||(28598476-28598570)
chr1 (182-276)||(43358910-43359004)
chr1 (182-263)||(1187991-1188072)
chr1 (1-90)||(43382062-43382151)
chr1 (226-276)||(17414555-17414605)
chr1 (195-261)||(35653209-35653275)
chr1 (226-274)||(3701485-3701533)
chr1 (237-276)||(10185835-10185874)
[»] chr7 (14 HSPs)
chr7 (1-140)||(17472693-17472832)
chr7 (1-140)||(17580382-17580521)
chr7 (183-276)||(5440244-5440337)
chr7 (183-276)||(5449254-5449347)
chr7 (183-275)||(4181347-4181439)
chr7 (182-276)||(12856956-12857050)
chr7 (182-276)||(26051188-26051282)
chr7 (182-276)||(26056301-26056395)
chr7 (182-276)||(26060547-26060641)
chr7 (182-276)||(26065660-26065754)
chr7 (182-274)||(12851845-12851937)
chr7 (182-260)||(14610512-14610590)
chr7 (218-274)||(37459842-37459898)
chr7 (182-276)||(35352263-35352358)
[»] scaffold0006 (1 HSPs)
scaffold0006 (184-274)||(144239-144329)
[»] chr6 (7 HSPs)
chr6 (182-276)||(21936629-21936723)
chr6 (182-275)||(21937734-21937827)
chr6 (182-275)||(24508803-24508896)
chr6 (189-276)||(24509867-24509954)
chr6 (189-274)||(20752088-20752173)
chr6 (182-276)||(21275940-21276034)
chr6 (199-264)||(11183147-11183212)
[»] chr3 (22 HSPs)
chr3 (182-276)||(49784653-49784747)
chr3 (182-276)||(4049975-4050069)
chr3 (182-276)||(10584801-10584895)
chr3 (182-276)||(10591238-10591332)
chr3 (180-276)||(29827571-29827666)
chr3 (182-276)||(1302187-1302281)
chr3 (182-276)||(4055109-4055203)
chr3 (182-276)||(5481431-5481525)
chr3 (182-276)||(8458479-8458573)
chr3 (182-276)||(8464917-8465011)
chr3 (182-276)||(10672881-10672975)
chr3 (226-276)||(20891194-20891244)
chr3 (182-276)||(33702542-33702636)
chr3 (184-276)||(5457956-5458048)
chr3 (182-276)||(6852895-6852989)
chr3 (182-276)||(6857998-6858092)
chr3 (182-276)||(31076345-31076439)
chr3 (182-276)||(31081450-31081544)
chr3 (227-276)||(18024168-18024217)
chr3 (237-276)||(33703467-33703506)
chr3 (182-276)||(10677994-10678090)
chr3 (227-275)||(18023560-18023607)
[»] chr8 (12 HSPs)
chr8 (182-275)||(18608593-18608685)
chr8 (183-275)||(25953119-25953211)
chr8 (182-276)||(34108398-34108492)
chr8 (182-276)||(14314854-14314948)
chr8 (182-276)||(14318558-14318652)
chr8 (182-276)||(26986932-26987026)
chr8 (182-276)||(43956793-43956887)
chr8 (182-275)||(26981818-26981911)
chr8 (189-276)||(10340917-10341004)
chr8 (182-276)||(18494120-18494213)
chr8 (195-275)||(1781986-1782066)
chr8 (215-248)||(18616167-18616200)
[»] scaffold0223 (1 HSPs)
scaffold0223 (182-276)||(1962-2056)
[»] chr5 (11 HSPs)
chr5 (182-276)||(13556247-13556341)
chr5 (183-276)||(35368845-35368938)
chr5 (193-276)||(2023121-2023203)
chr5 (182-276)||(9872367-9872461)
chr5 (182-276)||(9877482-9877576)
chr5 (182-276)||(39909125-39909219)
chr5 (194-274)||(43540737-43540815)
chr5 (215-276)||(39904012-39904073)
chr5 (182-275)||(43379556-43379644)
chr5 (228-276)||(4555787-4555835)
chr5 (198-275)||(43402092-43402169)
[»] scaffold0005 (1 HSPs)
scaffold0005 (215-275)||(173511-173571)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 16286263 - 16286003
Alignment:
Q  1 ttaaaaatttgattaaagtgtctaatgttatgtggattataagtagttttgttcgcattgagactttaaaaatgctagtagtaatattgaaattgttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  16286263 ttaaaaatttgattaaagtgtctaatgttatgtggattatatgtagttttgttcgcattgagatttttaaaatgctagcagtaatattgaaattgttgca 16286164  T
Q  101 agtgtttaactaatcacactaatgacgagttatgagtgtttaaatctaccgattctaaataaaatcataaattgatcatatctttggtaaaagggtgctt 200  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||  |||||||||| ||||||||||||||| |||| ||    
T  16286163 agtgtctaactaatcacactaatgacgagttataagtgtttaaatctaccaattttaaataaaacaataaattgataatatctttggtaaaatggtgttt 16286064  T
Q  201 aatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatata 261  Q
    ||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  16286063 aatgaactataacgttgattgaagttaaatgggtgttttctctcatgtgaagggtcatata 16286003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 180 - 275
Target Start/End: Original strand, 30283391 - 30283486
Alignment:
Q  180 atctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||||| ||||||||||||||||||| | ||  ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  30283391 atctttggcaaaagggtgcttaatgaaccataatattgattcaagttaaaggggtgttttctttcatgtgaagagtcatataatgcactataaatg 30283486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 42780419 - 42780341
Alignment:
Q  197 gcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42780419 gcttaatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagagtcatataatgcactataaatg 42780341  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 45120648 - 45120554
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  45120648 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 45120554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 17720469 - 17720563
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  17720469 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 17720563  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 716515 - 716422
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| |||| |||| |||||| ||   ||| |||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  716515 ctttggcaaaaaggtgtttaatggaccgtaacattgattcaagtcaaagggatgttttctctcatatgaaaggtcatataatgcactataaatg 716422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 14917325 - 14917419
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  | ||||||||||||||||||| |||||||||||||||||||||||    
T  14917325 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaatagctgttttctctcatgtgaagagtcatataatgcactataaatgc 14917419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 20892300 - 20892384
Alignment:
Q  189 aaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||| |||||||||||||| | ||| ||||||||| ||||| | |||||||||||| ||||||| |||||||||||||||||||||    
T  20892300 aaaaaggtgcttaatgaacca-aacattgattcaaatcaaatgagtgttttctctcgtgtgaagagtcatataatgcactataaat 20892384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 50167117 - 50166952
Alignment:
Q  1 ttaaaaatttgattaaagtgtctaatgttatgtggattataagtagttttgttcgcattgagactttaaaaatgctagta-gtaatattgaaattgttgc 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | ||||||||||||||||| |    
T  50167117 ttaaaaatttgattaaagtgtccaatgttatgtggattataagtagttttgttcgcgtttagattttaaaaatgctagcaagtaatattgaaattgttac 50167018  T
Q  100 aagtgtttaactaatcacactaatgacgagttatgagtgtttaaatctaccgattctaaataaaat 165  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||    
T  50167017 aagtgtataactaatcacactaatgacgagttatgagtatttaaatctactgattcaaaataaaat 50166952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 54859120 - 54859215
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaagggg-tgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||| || |||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54859120 ctttggcaaatggatgcttaatgaaccataacattgattcaagtcaaagggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 54859215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 34279456 - 34279550
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||||||| | ||| ||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  34279456 ctttggtaaaagggtgttcaattaaccataacattgattcaagtcaaatgagtgttttctctcatgtgaagggtcatataatgcactataaatgc 34279550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 3409551 - 3409643
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||||| ||| ||||||||||||||  | | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3409551 ctttggcaaaggggtgcttaatgaatcatagcattgattcaagtcaaaggagtgttttctctcatgtgaagggtcatataatgcactataaat 3409643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 34128218 - 34128297
Alignment:
Q  197 gcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  34128218 gcttaatgaactataacattgattcaagtcaaatgagtgttttctctaatgtgaagggtcatataatgcactataaatgc 34128297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 18671091 - 18670997
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||| | ||||||||||| | | | ||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  18671091 ctttggtaaaagagggcttaatgaaccatagcattgattcaagtcaaatgggtgctttctctcatgtgaagggtcatataatggactataaatgc 18670997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 30019791 - 30019883
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| |||| |||||||||||||| | ||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  30019791 ctttggcaaaaaggtgcttaatgaaccataacat-gattcaagtcaaatgggtgctttctctcatgtgaagggtcatataatgcactataaatg 30019883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 32429269 - 32429330
Alignment:
Q  215 ttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  32429269 ttgattcaagtcaaaggggtgttttctctcatttgaagagtcatataatgcactataaatgc 32429330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 35091176 - 35091082
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  35091176 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 35091082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 35096289 - 35096195
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  35096289 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 35096195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 14643721 - 14643781
Alignment:
Q  215 ttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  14643721 ttgattcaagtcaaatgggtgttttctatcatgtgaagggtcatataatgcgctataaatg 14643781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 3424698 - 3424745
Alignment:
Q  227 aaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3424698 aaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 3424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 22118957 - 22118872
Alignment:
Q  193 gggtgcttaatgaactagaacgttgattcaagtcaaaggggtgt--tttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||||||||||||| | |   || |||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||||    
T  22118957 gggtgcttaatgaaccatattattcattcaagtcaaaggggtgtattttctctcatgtgaagggtcatataatatactataaatgc 22118872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 34601998 - 34602061
Alignment:
Q  199 ttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataa 262  Q
    ||||||||||| | | ||||||||||||||| | ||||||| ||||||||||| ||||||||||    
T  34601998 ttaatgaactatagcattgattcaagtcaaatgagtgttttttctcatgtgaatggtcatataa 34602061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 25618264 - 25618337
Alignment:
Q  196 tgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||  | ||| ||||||||||||| || |||||||||||||||       |||||||||||||||||||||||    
T  25618264 tgcttaatgaatcataacattgattcaagtcacagaggtgttttctctcat-------gtcatataatgcactataaatgc 25618337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 47071585 - 47071553
Alignment:
Q  243 tcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||||||||||||||||||| ||||||||||    
T  47071585 tcatgtgaagggtcatataatgtactataaatg 47071553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 19311074 - 19310981
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19311074 ctttggtaaaagggtgcttaatgaactataacattgattcaagtcaaaggggtgctttctctcatgtgaagggtcatgtaatgcactataaatg 19310981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 13654568 - 13654478
Alignment:
Q  184 ttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||| |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13654568 ttggcaaaagggtacttaatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 13654478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 21431624 - 21431719
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaagggg-tgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||| | ||| |||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  21431624 ctttggcaaaagggtgcttaatgaaccataacattgatttaagtcaaagggggtgctttctctcatgtgaagggtcatataatgcactataaatgc 21431719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 10186535 - 10186617
Alignment:
Q  193 gggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||||| | | | ||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  10186535 gggtgcttaatgaaccatagcattggttcaagtcaaatgggtgctttctctcatgtgaagggtcatataatgcactataaatg 10186617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 44523985 - 44524069
Alignment:
Q  193 gggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctc--atgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||||| | ||| ||||||||||||||| |||||||||| |||  |||||||||||||||||||||||||||||||    
T  44523985 gggtgcttaatgaaccataacattgattcaagtcaaatgggtgttttccctcatatgtgaagggtcatataatgcactataaatg 44524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 16051433 - 16051353
Alignment:
Q  195 gtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||| | | | ||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||    
T  16051433 gtgcttaatgaaccatatcattgattcaagtcaaaagggtgttttcactcatgtgaatggtcatataatgcactataaatg 16051353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 3468329 - 3468235
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| ||||  ||| |||||||||||||||| |||||||||||||||||||||||    
T  3468329 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagatgtgctttctctcatgtgaagagtcatataatgcactataaatgc 3468235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 28574558 - 28574464
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  28574558 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgc 28574464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 28598570 - 28598476
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  28598570 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgc 28598476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 43359004 - 43358910
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||| ||||||||||||||  | | | ||||||||||||||| | ||| |||||||||||||||| ||| |||||||||||||||||||    
T  43359004 ctttggcaaaggggtgcttaatgaatcatagcattgattcaagtcaaatgagtgctttctctcatgtgaagagtcctataatgcactataaatgc 43358910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 1188072 - 1187991
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataat 263  Q
    |||||| ||| ||||| ||||||||| | ||| || ||||||||||||||||||||| |||||||||| || ||||||||||    
T  1188072 ctttggcaaatgggtgtttaatgaaccataacattaattcaagtcaaaggggtgtttactctcatgtgtagagtcatataat 1187991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 43382062 - 43382151
Alignment:
Q  1 ttaaaaatttgattaaagtgtctaatgttatgtggattataagtagttttgttcgcattgagactttaaaaatgctagtagtaatattga 90  Q
    ||||||||||||||||||||||| || |||| || ||| ||||||||||| |  ||||||||| | ||||||||| || |||||||||||    
T  43382062 ttaaaaatttgattaaagtgtcttatattatatgaattttaagtagttttatctgcattgagattgtaaaaatgcaagcagtaatattga 43382151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 17414555 - 17414605
Alignment:
Q  226 caaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  17414555 caaatgggtggtttctctcatgtgaatggtcatataatgcactataaatgc 17414605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 35653209 - 35653275
Alignment:
Q  195 gtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatata 261  Q
    ||||||||||||| | | | ||||||||| ||||| | |||||||||||||||||||||||||||||    
T  35653209 gtgcttaatgaaccatatcattgattcaattcaaatgagtgttttctctcatgtgaagggtcatata 35653275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 3701485 - 3701533
Alignment:
Q  226 caaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||||    
T  3701485 caaaagggtgttttctctcatgtgaagagtcacataatgcactataaat 3701533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 10185874 - 10185835
Alignment:
Q  237 tttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  10185874 tttctctcatatgaatggtcatataatgcactataaatgc 10185835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 17472693 - 17472832
Alignment:
Q  1 ttaaaaatttgattaaagtgtctaatgttatgtggattataagtagttttgttcgcattgagactttaaaaatgctagtagtaatattgaaattgttgca 100  Q
    ||||||||||||||||||||||| ||||||| |  ||| | ||||||||| || ||||||||| | |||||||||||| ||||||||||| |||||||||    
T  17472693 ttaaaaatttgattaaagtgtctgatgttatctaaattttcagtagttttatttgcattgagattgtaaaaatgctagcagtaatattgatattgttgca 17472792  T
Q  101 agtgtttaactaatcacactaatgacgagttatgagtgtt 140  Q
    |||||  ||||||||||||||||||| |||||||| ||||    
T  17472793 agtgtccaactaatcacactaatgacaagttatgattgtt 17472832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 17580521 - 17580382
Alignment:
Q  1 ttaaaaatttgattaaagtgtctaatgttatgtggattataagtagttttgttcgcattgagactttaaaaatgctagtagtaatattgaaattgttgca 100  Q
    ||||||||||||||||||||||| ||||||| |  ||| | ||||||||| || ||||||||| | |||||||||||| ||||||||||| |||||||||    
T  17580521 ttaaaaatttgattaaagtgtctgatgttatctaaattttcagtagttttatttgcattgagattgtaaaaatgctagcagtaatattgatattgttgca 17580422  T
Q  101 agtgtttaactaatcacactaatgacgagttatgagtgtt 140  Q
    |||||  ||||||||||||||||||| |||||||| ||||    
T  17580421 agtgtccaactaatcacactaatgacaagttatgattgtt 17580382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 5440244 - 5440337
Alignment:
Q  183 tttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||| ||| ||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5440244 tttgggaaaggggtgattaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaagggtcatataatgcactataaatgc 5440337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 5449254 - 5449347
Alignment:
Q  183 tttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||| ||| ||||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5449254 tttgggaaaggggtgattaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaagggtcatataatgcactataaatgc 5449347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 4181347 - 4181439
Alignment:
Q  183 tttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||| ||| |||||||||||||||   ||| |||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||    
T  4181347 tttggcaaaggggtgcttaatgaaccttaacattgattcaagtcaaaatggtgttttctctcatatgaagagtcatataatgcactataaatg 4181439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 12857050 - 12856956
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  12857050 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 12856956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 26051282 - 26051188
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  26051282 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 26051188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 26056395 - 26056301
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  26056395 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 26056301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 26060641 - 26060547
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  26060641 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 26060547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 26065754 - 26065660
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  26065754 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 26065660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 12851937 - 12851845
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||    
T  12851937 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaat 12851845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 14610590 - 14610512
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatat 260  Q
    |||||| ||||||||||||||||||  |   | |||||||||||||||| |||| |||||||||||||||| |||||||    
T  14610590 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagtcaaagaggtgctttctctcatgtgaagagtcatat 14610512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 37459842 - 37459898
Alignment:
Q  218 attcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||||| ||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  37459842 attcaaatcaaatgcgtgttttctctcatgtgaatggacatataatgcactataaat 37459898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 35352263 - 35352358
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctca-tgtgaagggtcatataatgcactataaatgc 276  Q
    ||||| |||| ||||||||||||||| | | |||||| ||||||||||| |   |||||||||| | |||||||||||||||||||| ||| ||||    
T  35352263 ctttgataaatgggtgcttaatgaaccaaatcgttgaatcaagtcaaagagacattttctctcattttgaagggtcatataatgcaccatatatgc 35352358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 144329 - 144239
Alignment:
Q  184 ttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||| |||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144329 ttggcaaaagggtacttaatgaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 144239  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 21936629 - 21936723
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||| |||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936629 ctttggcaaaaaggtgcttaataaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 21936723  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 21937827 - 21937734
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| ||||||||| ||||||||| |  || |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  21937827 ctttggcaaaagggtgtttaatgaaccatcacattgattcaagtcaaaggggtattttctctcatgtgaagggtcatataacgcactataaatg 21937734  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 24508803 - 24508896
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||    
T  24508803 ctttggcaaaagggtgcttaatgaaccataacattgattcaagtcaaaggggtgttttctctcatgagaagggtcatattatgtactgtaaatg 24508896  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 24509954 - 24509867
Alignment:
Q  189 aaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||| ||| ||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  24509954 aaaagtgtgtttaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaaggttcatataatgcactataaatgc 24509867  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 20752088 - 20752173
Alignment:
Q  189 aaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||| |||||||||||||| | ||| ||||||||||||||| | ||||||||||||||||||| |||||| |||||||||||||||    
T  20752088 aaaatggtgcttaatgaaccataacattgattcaagtcaaatgagtgttttctctcatgtgaaaggtcatctaatgcactataaat 20752173  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 21276034 - 21275940
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  21276034 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 21275940  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 11183147 - 11183212
Alignment:
Q  199 ttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatg 264  Q
    ||||||||| | |||  |||||||||||||| |||||| ||||| |||||||||| ||||||||||    
T  11183147 ttaatgaaccataacactgattcaagtcaaatgggtgtgttctcccatgtgaaggctcatataatg 11183212  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 49784747 - 49784653
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||| ||||||||||||||  | ||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||    
T  49784747 ctttggcaaatgggtgcttaatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaagagtcatataatgcactataaatgc 49784653  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 4050069 - 4049975
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  4050069 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgc 4049975  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 10584801 - 10584895
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  10584801 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgc 10584895  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 10591238 - 10591332
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  10591238 ctttggtaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 10591332  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 180 - 276
Target Start/End: Complemental strand, 29827666 - 29827571
Alignment:
Q  180 atctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||| |||| |||||||||||||  | ||| ||||||||||||||||||||||||||| |||||||||  ||||||||||||| |||||||||    
T  29827666 atctttggcaaaatggtgcttaatgaatcataacattgattcaagtcaaaggggtgttttctatcatgtgaa-agtcatataatgcattataaatgc 29827571  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 1302187 - 1302281
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  1302187 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 1302281  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 4055203 - 4055109
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  4055203 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 4055109  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 5481431 - 5481525
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  5481431 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 5481525  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 8458573 - 8458479
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||| ||||||||  |   | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  8458573 ctttggcaaaagggtggttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgc 8458479  T

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Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 8465011 - 8464917
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||| |||||||||||||  |  || ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  8465011 ctttggcaaaatggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 8464917  T

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Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 10672881 - 10672975
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  10672881 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 10672975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 20891244 - 20891194
Alignment:
Q  226 caaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20891244 caaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 20891194  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 33702542 - 33702636
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  33702542 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 33702636  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 276
Target Start/End: Original strand, 5457956 - 5458048
Alignment:
Q  184 ttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||| ||||||||||||||||||  |  || ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  5457956 ttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 5458048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 6852895 - 6852989
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||||||||||| |||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  6852895 ctttggcaaaagggtgcttgatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 6852989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 6857998 - 6858092
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||||||||||| |||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  6857998 ctttggcaaaagggtgcttgatgaatcatggcattgattcaagttaaagaggtgatttctctcatgtgaagagtcatataatgcactataaatgc 6858092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 31076345 - 31076439
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| ||||||||||||| |||||||||    
T  31076345 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcattataaatgc 31076439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 31081450 - 31081544
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| ||||||||||||| |||||||||    
T  31081450 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcattataaatgc 31081544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 18024168 - 18024217
Alignment:
Q  227 aaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18024168 aaagaggtgttttctctcatgtgaagggtcatataatgcactataaatgc 18024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 33703506 - 33703467
Alignment:
Q  237 tttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  33703506 tttctctcatgtgaagagtcatataatgcactataaatgc 33703467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 10677994 - 10678090
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtca--tataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  |||| ||||| |||||||||| ||||  |||||||||||||||||||    
T  10677994 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaaaaggtgctttctttcatgtgaagagtcacatataatgcactataaatgc 10678090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 18023560 - 18023607
Alignment:
Q  227 aaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||| |||||||||||||||||||| ||||||||||| || ||||||||    
T  18023560 aaagaggtgttttctctcatgtgaa-ggtcatataatacattataaatg 18023607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 18608593 - 18608685
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| ||| ||||||||||||||| | ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  18608593 ctttggcaaaggggtgcttaatgaaccataacattgattcaagttaaaggggtgttttctctcatgtgaa-ggtcatataatgcactacaaatg 18608685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 25953119 - 25953211
Alignment:
Q  183 tttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||| |||||| |||||||||||| | ||  |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  25953119 tttggcaaaaggatgcttaatgaaccataaaattgatttaagtcaaatgggtgttttctctcatgtgaatggtcatataatgcactataaatg 25953211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 34108492 - 34108398
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  34108492 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 34108398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 14314854 - 14314948
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  14314854 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgc 14314948  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 14318558 - 14318652
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  14318558 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaagagtcatataatgcactataaatgc 14318652  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 26986932 - 26987026
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  26986932 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatgc 26987026  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 43956793 - 43956887
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||| |||||||||||||  | | | ||||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||    
T  43956793 ctttggcaaaaaggtgcttaatgaatcatagcattgattcaagtcaaatgagtgctttctctcatgtgaagagtcatataatgcactataaatgc 43956887  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 26981818 - 26981911
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  26981818 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaagagtcatataatgcactataaatg 26981911  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 276
Target Start/End: Original strand, 10340917 - 10341004
Alignment:
Q  189 aaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||||||||||||||||  | | | |||||||||||||||| |||| ||| |||||||||||| |||||||||||||| ||||||||    
T  10340917 aaaagggtgcttaatgaatcatagcattgattcaagtcaaagaggtgctttttctcatgtgaagagtcatataatgcaccataaatgc 10341004  T

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Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 18494120 - 18494213
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |  || ||||||||||| ||| || || |||||||||||||||| |||||||||||||||||||||||    
T  18494120 ctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaaagg-tgctttctctcatgtgaagagtcatataatgcactataaatgc 18494213  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 275
Target Start/End: Complemental strand, 1782066 - 1781986
Alignment:
Q  195 gtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||| | ||| |||||||||||||||   || |||||||||||||||| |||| |||| |||||||||||||    
T  1782066 gtgcttaatgaaccataacattgattcaagtcaaaatagtattttctctcatgtgaaaggtcgtatactgcactataaatg 1781986  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 18616200 - 18616167
Alignment:
Q  215 ttgattcaagtcaaaggggtgttttctctcatgt 248  Q
    ||||||||||| ||||||||||||||||||||||    
T  18616200 ttgattcaagttaaaggggtgttttctctcatgt 18616167  T

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Target: scaffold0223 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 1962 - 2056
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  1962 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaagagtcatataatgcactataaatgc 2056  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 13556247 - 13556341
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| |||| |||||||||||||  | | | ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||    
T  13556247 ctttggcaaaaaggtgcttaatgaatcatagcattgattcaagtcaaatgggtgctttctctcatgtgaagagtcatataatgcactataaatgc 13556341  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 276
Target Start/End: Original strand, 35368845 - 35368938
Alignment:
Q  183 tttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||| ||||| |||| ||||||||  | ||| ||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||||||    
T  35368845 tttgataaaaaggtgtttaatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaaaagtcatataatgcactataaatgc 35368938  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 2023203 - 2023121
Alignment:
Q  193 gggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||| ||||||||  | ||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||    
T  2023203 gggtgtttaatgaatcataacattgattcaagtcaaaggg-tgctttctctcatgtgaagagtcatataatgcactataaatgc 2023121  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 9872367 - 9872461
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  9872367 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 9872461  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 9877482 - 9877576
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  9877482 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 9877576  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 39909219 - 39909125
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    |||||| ||||||||||||||||||  |   | ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  39909219 ctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 39909125  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 43540737 - 43540815
Alignment:
Q  194 ggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaat 274  Q
    |||||||||||||| | ||| |||| |||||||||| | |||||  |||||||||||||||||||||||||||||||||||    
T  43540737 ggtgcttaatgaaccataacattgactcaagtcaaatgagtgtt--ctctcatgtgaagggtcatataatgcactataaat 43540815  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 39904073 - 39904012
Alignment:
Q  215 ttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||||||||| |||  |||| |||||||||||||||| |||||||||||||||||||||||    
T  39904073 ttgattcaagttaaataggtgctttctctcatgtgaagagtcatataatgcactataaatgc 39904012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 43379644 - 43379556
Alignment:
Q  182 ctttggtaaaagggtgcttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||||||||| ||||||| ||||  | ||| ||||||||||| ||| | |||||||     |||||||||||||||||||||||||||||||    
T  43379644 ctttggtaaaagagtgcttagtgaatcataacattgattcaagtaaaatgagtgtttt-----atgtgaagggtcatataatgcactataaatg 43379556  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 4555835 - 4555787
Alignment:
Q  228 aaggggtgttttctctcatgtgaagggtcatataatgcactataaatgc 276  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  4555835 aaggggtgttttctctcatgttaatagtcatataatgcactataaatgc 4555787  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 43402092 - 43402169
Alignment:
Q  198 cttaatgaactagaacgttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    |||||||||| | ||| ||||||| | |||||  | |||||||| |||| |||||| |||||||||||||||||||||    
T  43402092 cttaatgaaccataacattgattcgaatcaaattgatgttttctttcatatgaaggatcatataatgcactataaatg 43402169  T

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Target: scaffold0005 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 173571 - 173511
Alignment:
Q  215 ttgattcaagtcaaaggggtgttttctctcatgtgaagggtcatataatgcactataaatg 275  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  173571 ttgattcaagtcaaatgggtgttttctatcatgtgaagggtcatataatgcgctataaatg 173511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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