View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18828_low_5 (Length: 240)

Name: NF18828_low_5
Description: NF18828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18828_low_5
NF18828_low_5
[»] chr5 (12 HSPs)
chr5 (1-218)||(37702688-37702905)
chr5 (1-218)||(37400801-37401018)
chr5 (1-218)||(37594344-37594561)
chr5 (1-190)||(37823943-37824132)
chr5 (1-190)||(37533148-37533337)
chr5 (1-218)||(37711644-37711861)
chr5 (1-200)||(37435745-37435944)
chr5 (1-190)||(37696769-37696958)
chr5 (1-196)||(37639914-37640109)
chr5 (1-218)||(37392815-37393032)
chr5 (1-202)||(37382258-37382459)
chr5 (1-185)||(37413179-37413363)
[»] chr3 (1 HSPs)
chr3 (1-160)||(14553188-14553347)
[»] chr4 (2 HSPs)
chr4 (4-218)||(16842802-16843016)
chr4 (13-189)||(24217675-24217851)


Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37702905 - 37702688
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||||       |||||||| |||  ||||||||||||||||||||||||||    
T  37702905 ttgtcgtcaacaaacttgagtggtgtcgtggattttcaccaattttcaaaattaaaaaaactaaattccctcattctttcacacaatagttttatttcta 37702806  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||||||||||||    
T  37702805 tcaacattgatagcagtgctgactccatcttacccaaccttgttgacttagatttctcgtctgctaatattaatagttttcctaaattccaagcacaaaa 37702706  T
Q  201 tctgaaaagattatatct 218  Q
    |||| ||| |||| ||||    
T  37702705 tctgcaaacattagatct 37702688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37400801 - 37401018
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||   | |||| ||||||| || ||||||||| ||||||    
T  37400801 ttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactatggtttctccatctttcccataatagttttctttcta 37400900  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    |||||||||||||||||||| |||||||||||||||||||| ||   ||||||||||| | ||||||||||||||||||||||||||||| ||||| |||    
T  37400901 tcaacattgatagcagtgctgactccatcttacccaacctttttttattagatttatcctctgctaatattaatagttttcctaaattcccagcacgaaa 37401000  T
Q  201 tctgaaaagattatatct 218  Q
    ||||||||||||||||||    
T  37401001 tctgaaaagattatatct 37401018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37594561 - 37594344
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||||       ||| | | |||| |||||||||||||||||||| ||||||    
T  37594561 ttgtcatcaaccaacttgagtggtgttgtcgattttcaccaattttcaaaattaaacaaactagaatatctccatctttcacacaatagttttctttcta 37594462  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| ||| |||    
T  37594461 tcaactttgatagcagtgctgactccatcttacccaaccttgttgacttagttttatcttattctaatattaatagttttcctaaattccaaacacgaaa 37594362  T
Q  201 tctgaaaagattatatct 218  Q
    |||  |||||||| ||||    
T  37594361 tcttcaaagattagatct 37594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37824132 - 37823943
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||| |||||||||||||| |||| || |||    
T  37824132 ttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactaaattccctcgttctttcacacaatacttttcttgcta 37824033  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 190  Q
    |||||| ||||||||||||| |||||||||||||||||||| ||   ||||||||||| | |||||||||||||||||||||||||||||    
T  37824032 tcaacactgatagcagtgctgactccatcttacccaaccttttttcattagatttatcctctgctaatattaatagttttcctaaattcc 37823943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37533337 - 37533148
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||       |||  ||| || |||||||| || ||||||||| ||||||    
T  37533337 ttgtcatccacaaacttaagtggtgttgtggattttcaccaattttcaaaattaaacaaactaggttcccttgatctttcccataatagttttctttcta 37533238  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 190  Q
    |||||||| |||||| || | ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  37533237 tcaacattaatagcaatgttgactccatcttacccaaccttgttgacttagaattatctaatgctaatattaatagttttcctaaattcc 37533148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 37711861 - 37711644
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||   | ||||| |||||||||||||| |||| ||||||    
T  37711861 ttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactatggtatctcgttctttcacacaatacttttctttcta 37711762  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    |||||||||||||||||  | |||||||| ||||||||||| ||   ||||||||||| | ||||||||||||||||||||||||||||||||||| |||    
T  37711761 tcaacattgatagcagtattgactccatcatacccaaccttttttcattagatttatcctctgctaatattaatagttttcctaaattccaagcacgaaa 37711662  T
Q  201 tctgaaaagattatatct 218  Q
    |||| ||| |||| ||||    
T  37711661 tctgcaaacattagatct 37711644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 37435944 - 37435745
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctc-tcgatctttcacacaatagttttatttct 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |       |||| ||||| || ||||||| |||||||||||| |||||    
T  37435944 ttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaacttaaaaatctaa-ttctcctcaatctttcgcacaatagttttctttct 37435846  T
Q  100 atcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaa 199  Q
    ||||||| | ||||||||||| |||||||||||||||||||||  |  ||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  37435845 atcaacactaatagcagtgctgactccatcttacccaaccttgagatgttagatttatcttctgctaatattaatagttttcctaaattccacgcacaaa 37435746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37696958 - 37696769
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||       |||     ||||| |||||||||||||| |||| || |||    
T  37696958 ttgtcatcaaccaacttgagtggtgttgtggattttcaccaattttcaaaattaaaaaaactatggcatctcgttctttcacacaatacttttcttgcta 37696859  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattcc 190  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||    
T  37696858 tcaacactgatagcagtgctgactccatcttacccaaccttgttgacttagaattatctaatgctaatattaatagttttcctaaattcc 37696769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 37640109 - 37639914
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||| ||| || |||||||| || ||||||||| ||||||    
T  37640109 ttgtcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactaagttcccttgatctttcccataatagttttctttcta 37640010  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcac 196  Q
    |||||||||||||||||||| |||||||||||||||||||||     ||| ||||||||| |||||||||||| |||||||| ||||||| |||||    
T  37640009 tcaacattgatagcagtgctgactccatcttacccaaccttgaatcattatatttatcttctgctaatattaaaagttttcccaaattcctagcac 37639914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 37392815 - 37393032
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||||       |||   | |||| |||||||||||||| ||||| ||||||    
T  37392815 ttgtcttcaacaaacttaagtggtgttgtggattttcaccaattttcaaaattaaacagactatggtatctctatctttcacacaatggttttctttcta 37392914  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    |||||||||||||||||| | || |||||||||| |||||| ||   ||||||||||| ||||| ||||||||||||||||||||||||||||||| |||    
T  37392915 tcaacattgatagcagtgttgacaccatcttacctaaccttttttcattagatttatcatatgccaatattaatagttttcctaaattccaagcacgaaa 37393014  T
Q  201 tctgaaaagattatatct 218  Q
    |||| |||| ||| ||||    
T  37393015 tctggaaagcttagatct 37393032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 37382258 - 37382459
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||| |        |||  ||  || |||||||| |||||||||||  ||||||    
T  37382258 ttgtcatcaaccaacttgagtggtgttgtggactttcaccaattttcaaattgtaagaagctatttttccttgatctttcccacaatagtttgctttcta 37382357  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaa 200  Q
    |||| ||||| ||||| | | |||||||||||||||||||||  |  ||| ||||||||| |  |||||||| ||||||||||||||||  |||||||||    
T  37382358 tcaatattgaaagcagagttgactccatcttacccaaccttgggatattatatttatcttctagtaatattagtagttttcctaaattcttagcacaaaa 37382457  T
Q  201 tc 202  Q
    ||    
T  37382458 tc 37382459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 37413179 - 37413363
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||| ||||||||||  || | |||||| ||||| ||||||||||| ||       |||| ||  || |||||||| | ||| | |||| |||||     
T  37413179 ttgtcatcaacaaacttgaacggcgatgtggactttcatcaattttcaaattttgaaaaactaactttccttgatctttcccgcaacaattttctttctg 37413278  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaa 185  Q
    ||||||||| |||||||| | ||||||||| |||||||||||     ||| ||||||||| |  |||||||||||||||||||||    
T  37413279 tcaacattggtagcagtgttgactccatctcacccaaccttgaatcattatatttatcttctagtaatattaatagttttcctaa 37413363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14553347 - 14553188
Alignment:
Q  1 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||||||||||||    
T  14553347 ttgtcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaaaaaactaaattccctcgatctttcacacaatagttttatttcta 14553248  T
Q  101 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatctt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14553247 tcaacattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatctt 14553188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 16842802 - 16843016
Alignment:
Q  4 tcatccacaaacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatca 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||       |||   | |||||||||||||||||||| |||| |||||||||    
T  16842802 tcatcaacaaacttgagtggtgttgtggattttcaccaattttcaaaattaaacaaactagggtatctcgatctttcacacaatacttttctttctatca 16842901  T
Q  104 acattgatagcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattccaagcacaaaatct 203  Q
    ||| |||||||| |||| |||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  16842902 acactgatagcattgctgactccatcttacccaaccttttttcattagatttatcttatgctaatattaatagttttcctaaattccaaacacgaaatct 16843001  T
Q  204 gaaaagattatatct 218  Q
      |||||||| ||||    
T  16843002 tcaaagattagatct 16843016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 24217675 - 24217851
Alignment:
Q  13 aacttgagtggtgttgtggattttcaccaattttcaaaattnnnnnnnctaaattctctcgatctttcacacaatagttttatttctatcaacattgata 112  Q
    |||||||||||||||||||| ||||||||||||||||| ||       |||  ||| || ||||||||  |||||| | |||||||||| ||| ||| ||    
T  24217675 aacttgagtggtgttgtggactttcaccaattttcaaattttagaaaactattttcccttgatctttcctacaataatcttatttctattaacgttggta 24217774  T
Q  113 gcagtgctaactccatcttacccaaccttgttaacttagatttatcttatgctaatattaatagttttcctaaattc 189  Q
    || | ||| ||| ||||||||||||||||| | | |||  |||||||| |  |||| ||||| ||||||||||||||    
T  24217775 gcggcgctgactacatcttacccaaccttgatgatttatctttatcttcttgtaatgttaatggttttcctaaattc 24217851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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