View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_high_8 (Length: 301)
Name: NF18829_high_8
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 31646566 - 31646852
Alignment:
| Q |
1 |
atatattcatgatcatgaatatatatatgaagttgatattggtgtgcactttttggttttgatgatacagttcaaatgttgaagaagggggtgagacagt |
100 |
Q |
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| T |
31646566 |
atatattcatgatcatgaatatatatatgaagttgatattggtgtgcactttttggttttgatgatacaattcaaatgttgaagaagggggtgagacagt |
31646665 |
T |
|
| Q |
101 |
gtttccatttgctgagggaaattttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31646666 |
gtttccatttgctgagggaaattttagctctgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgat |
31646765 |
T |
|
| Q |
201 |
gcattacttttctggagtatgaagccagatggaactttagatccactgagtatgcatggttagtatctcttttattatcatttttat |
287 |
Q |
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| T |
31646766 |
gcattacttttctggagtatgaagccagatggaactttagatccactgagtatgcatggttagtatctcttttattatcatttttat |
31646852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 31637879 - 31638134
Alignment:
| Q |
21 |
atatatatgaagttgatattggtgtgcac--tttttgg-ttttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagg |
117 |
Q |
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||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
31637879 |
atatatatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagg |
31637978 |
T |
|
| Q |
118 |
gaaattttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggag |
217 |
Q |
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| T |
31637979 |
gaaattttagctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctgggg |
31638078 |
T |
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| Q |
218 |
tatgaagccagatggaactttagatccactgagtatgcatggttagtatctctttt |
273 |
Q |
| |
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|||||||| |||| ||| |||||||| ||||| | ||||||||||| ||||||| |
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| T |
31638079 |
catgaagcctgatgcaaccgtagatccattgagtgttcatggttagtaactctttt |
31638134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 32 - 264
Target Start/End: Original strand, 31630570 - 31630803
Alignment:
| Q |
32 |
gttgatattggtgtgcactttttggtt-ttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaattttagctc |
130 |
Q |
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|||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||| |
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| T |
31630570 |
gttgatattggtgtccactttttgtaaattgattatacagttcagatgttgaagaagggggtgagacagtgttcccagctgccaaggggaatattagctc |
31630669 |
T |
|
| Q |
131 |
tgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagccagat |
230 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31630670 |
tgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgatgcattacttttttggagcatgaagccagat |
31630769 |
T |
|
| Q |
231 |
ggaactttagatccactgagtatgcatggttagt |
264 |
Q |
| |
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||||||||||||||| |||| |||||||||||| |
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| T |
31630770 |
ggaactttagatccatcgagtttgcatggttagt |
31630803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 245
Target Start/End: Original strand, 31652098 - 31652321
Alignment:
| Q |
25 |
atatgaagttgatattggtgtgcactttttg-gt--tttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaa |
121 |
Q |
| |
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|||||||||||||||||| || |||||||| || || |||||||||||||| |||| ||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
31652098 |
atatgaagttgatattggagttcactttttttgtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaa |
31652197 |
T |
|
| Q |
122 |
ttttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatg |
221 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| ||| |
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| T |
31652198 |
ttttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatg |
31652297 |
T |
|
| Q |
222 |
aagccagatggaactttagatcca |
245 |
Q |
| |
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||||| |||| ||||||||||||| |
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| T |
31652298 |
aagcctgatgcaactttagatcca |
31652321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 31656904 - 31657125
Alignment:
| Q |
29 |
gaagttgatattggtgtgcactttttggtttt-----gatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaatt |
123 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||| ||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||| |
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| T |
31656904 |
gaagttgatattggtgttcactttttttttgtaattcgataatacagttcggatgttgaagaagggggtgagacggtgttcccaaatgccaagggaaatt |
31657003 |
T |
|
| Q |
124 |
ttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaa |
223 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
31657004 |
ttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactgtcaattaagccaaagatgggtaatgctatacttttctggagcatgaa |
31657103 |
T |
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| Q |
224 |
gccagatggaactttagatcca |
245 |
Q |
| |
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||| |||| ||||||||||||| |
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| T |
31657104 |
gcctgatgcaactttagatcca |
31657125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 9104934 - 9104719
Alignment:
| Q |
57 |
ttttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaattttagctctgtgtcttggtggaatgagctttcgg |
156 |
Q |
| |
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|||| |||||||||| || |||||||||||||||||||||||||||| || |||| |||| ||||| || |||| | |||| ||||||||||| | |
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| T |
9104934 |
ttttaatgatacagtacagatgttgaagaagggggtgagacagtgttccctgctgctaaggggaatttcagtaatgtgccgtggtataatgagctttctg |
9104835 |
T |
|
| Q |
157 |
attgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagccagatggaactttagatccactgagtatgca |
256 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||| |||||||||| || || |||| |
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| T |
9104834 |
attgtgggaaaaaaggactttcaattaagccaaagagaggtgatgctttacttttctggagcatgaagccggatgcaactttagatgcatcaagcttgca |
9104735 |
T |
|
| Q |
257 |
tggttagtatctcttt |
272 |
Q |
| |
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|||||||| ||||||| |
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| T |
9104734 |
tggttagtttctcttt |
9104719 |
T |
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