View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18829_low_10 (Length: 307)
Name: NF18829_low_10
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 12885138 - 12884861
Alignment:
| Q |
12 |
atgaagatccaaaatcaaaattattgttaaaattgaaaagcatcttcactttattcatcaaatcattattctgataaatcaactcagtagatccaagctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885138 |
atgaagatccaaaatcaaaattattgttaaaattgaaaagcatcttcactttattcatcaaatcattattctgataaatcaactcagtagatccaagctc |
12885039 |
T |
|
| Q |
112 |
caaaacacctccagccgacggtatacatgccagcgtctgaataccatgttcttgaccttgcctcgccctctcacaagctgagagggcgagattttcagct |
211 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12885038 |
caaaacaccgtcagccgaccgtatacacgccagcgtctgtataccatgttcttgaccttgcctcgccctctcacaagctgagagggcgagattttcagct |
12884939 |
T |
|
| Q |
212 |
ccagttaaccacaccggagctgaattataataagcttgtccaggcagtccagttccgttaacaaaagactgtgtcata |
289 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12884938 |
ccagttagccacaccggagctgaattataataagcttgtccaggcagtccagttccgttaacaaaagactgcgtcata |
12884861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 12868947 - 12868673
Alignment:
| Q |
14 |
gaagatccaaaatcaaaattattgttaaaattgaaaagcatcttcactttattcatcaaatcattattctgataaatcaactcagtagatccaagctcca |
113 |
Q |
| |
|
||||||||||||||||||| ||| || |||| || | |||||||||||||| ||| |||||||| || ||||||||||| || || ||||||||||| | |
|
|
| T |
12868947 |
gaagatccaaaatcaaaatcattattgaaatccaataacatcttcactttatccatgaaatcattgttttgataaatcaattcggtcgatccaagctcta |
12868848 |
T |
|
| Q |
114 |
aaacacctccagccgacggtatacatgccagcgtctgaataccatgttcttgaccttgcctcgccctctcacaagctgagagggcgagattttcagctcc |
213 |
Q |
| |
|
|||| || || ||||||| ||| ||||||||| | ||| |||||||||||||| ||||||||||| || |||||| | ||||| ||| | || |
|
|
| T |
12868847 |
aaacgccgttcgctgacggtacacacaccagcgtctctaaaccgtgttcttgaccttgtctcgccctctcgcagtgcgagaggacaagattctcaccgcc |
12868748 |
T |
|
| Q |
214 |
agttaaccacaccggagctgaattataataagcttgtccaggcagtccagttccgttaacaaaagactgtgtcat |
288 |
Q |
| |
|
| | ||||||||||| ||| || |||||||||||||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
12868747 |
aaccagccacaccggagttgagttgaaataagcttgtccaggaagtccaccgtcgttaacaaaagactgagtcat |
12868673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University