View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_12 (Length: 282)
Name: NF18829_low_12
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 325898 - 325635
Alignment:
| Q |
19 |
atataacctaacagattaacctaaataacatataacctaacagattaatgaaaacatactactcataaccatgccctaaatatgtgcaaactcaacaatt |
118 |
Q |
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| T |
325898 |
atataacctaacagattaacctaaataacatataacctaacagattaatgaaaacatactactcataaccatgccctaaatacgtgcaagctcaacaatt |
325799 |
T |
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| Q |
119 |
caaactctgttagataacagattggctaaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaattctcagac |
218 |
Q |
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| T |
325798 |
caaactctgttagataacagattggctaaattgagtgactacctttaatttcatatctcaatttatcatttcataagtttgggtgatcaaattctcagac |
325699 |
T |
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| Q |
219 |
ctcgacaacttcaataactaaagtattgattcactcgattcaatacactaatccctttactctt |
282 |
Q |
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| T |
325698 |
ctcgacaacttcaataactaaagtattgattcactcgattcaatacactaatccctttactctt |
325635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 324268 - 324124
Alignment:
| Q |
125 |
ctgttagataacagattggctaaattgagtgactacctttaatttcatagctcaatttatcagttcataagtttgggtgatcaaat--tctcagacctcg |
222 |
Q |
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|||||| |||| ||||||| |||||||| | || | |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
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| T |
324268 |
ctgttaaataaaagattggttaaattgattcacagcttttaatttcatagctcaatttatctgttcataaatttgggtgatcaaattctctcagacctct |
324169 |
T |
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| Q |
223 |
acaacttcaataactaaagtattgattcactcgattcaatacact |
267 |
Q |
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| T |
324168 |
acaatttcaagaactaaaatattgactcactctattgaatgcact |
324124 |
T |
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