View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_14 (Length: 273)
Name: NF18829_low_14
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 54221089 - 54221296
Alignment:
| Q |
1 |
aaagcaatgtctatcagattactaccgtgtccaaactcaaacaaatgtctgataaatgcaacnnnnnnntaaagatttatttgaatgcgacaactgaaat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
54221089 |
aaagcaatgtctatcagattactaccatgtccaaactcaaacaaatgtctgataaatgcaacaaaaaaataaagatttatttgaatgcgacaaccgaaat |
54221188 |
T |
|
| Q |
101 |
atttggtggaaaacaatacagaaacaagctaagaaactaagcaagcaaaacatcattaacaagagcgctgctaaggcgatcatataacacagtgaatcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54221189 |
atttggtggaaaacaatacagaaacaagctaagaaactaagcaagcaaaacatcattaacaagagcgctgctaaggcgatcatataacacagtgaatcga |
54221288 |
T |
|
| Q |
201 |
aacaatgc |
208 |
Q |
| |
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|||||||| |
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| T |
54221289 |
aacaatgc |
54221296 |
T |
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