View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_15 (Length: 255)
Name: NF18829_low_15
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 48923734 - 48923970
Alignment:
| Q |
15 |
tatttaaagctaaatatgtatacaaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaa |
114 |
Q |
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| T |
48923734 |
tatttaaagctaaatatgtatacaaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaa |
48923833 |
T |
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| Q |
115 |
atgttcaactgcagaataagaaacataaaggttatctacatgtttatacatatgcatctacaaacacatactcaaaatcctgctacatgcttataagaaa |
214 |
Q |
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| T |
48923834 |
atgttcaactgcagaataagaaacataaaggttatctacatgtttatacatatgcatctacaaacacatactcaaaatccagc----tgcttataagaaa |
48923929 |
T |
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| Q |
215 |
tcagaattataatgaaaacttctatgaatcataggttttga |
255 |
Q |
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| T |
48923930 |
tcagaattataatgaaaacttctatgaatcataggttttga |
48923970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 48912352 - 48912549
Alignment:
| Q |
37 |
caaattaacttgttcttgtaactgggggacaatgtcaattgcaggagtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaa |
136 |
Q |
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| T |
48912352 |
caaattaacttgttcttgtaactgggagactatatccatcgtcgaagaaactttatggcgataatttcaaattaacaaa-gttcaactgcagaataagaa |
48912450 |
T |
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| Q |
137 |
acataaaggttatctacatgtttatacatatgcatctacaaacaca--tactcaaaatcctgctacatgcttataagaaatcagaattataatgaaaac |
233 |
Q |
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| T |
48912451 |
acataaaggttatcgatacgtttatacatatgcaattacggacatatgtagtcaaaatccagttacatgcttatgacaaatctaaattctaatgaaaac |
48912549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 28656068 - 28656129
Alignment:
| Q |
82 |
agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa |
143 |
Q |
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| T |
28656068 |
agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa |
28656129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 28656199 - 28656299
Alignment:
| Q |
151 |
tacatgtttatacatatgcatctacaaacacatactcaa------aatcctgctacatgcttataagaaatcagaattataatgaaaacttctatgaatc |
244 |
Q |
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| T |
28656199 |
tacatgtttatacatatgcatctacaaacacatactcaaaatcataatccaactaaatgcttatgtgaaatcagaattttaatgaaaacttttatgaatc |
28656298 |
T |
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| Q |
245 |
a |
245 |
Q |
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| T |
28656299 |
a |
28656299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 31281488 - 31281549
Alignment:
| Q |
82 |
agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa |
143 |
Q |
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| T |
31281488 |
agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa |
31281549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 55425215 - 55425154
Alignment:
| Q |
82 |
agtaactttatggagaaaatttcgacttaaaaaatgttcaactgcagaataagaaacataaa |
143 |
Q |
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| T |
55425215 |
agtaactttatggagaatatttcgacttaaaaaaatttcaactgcagaataagaaacataaa |
55425154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 31281619 - 31281719
Alignment:
| Q |
151 |
tacatgtttatacatatgcatctacaaacacatac------tcaaaatcctgctacatgcttataagaaatcagaattataatgaaaacttctatgaatc |
244 |
Q |
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| T |
31281619 |
tacatgtttatacatatgcatctacaaacacatactcaaaatcaaaatccaactaaatgcttatgtgaaattagaattttaatgaaaacttttatgaatc |
31281718 |
T |
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| Q |
245 |
a |
245 |
Q |
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| T |
31281719 |
a |
31281719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 55425096 - 55424996
Alignment:
| Q |
151 |
tacatgtttatacatatgcatctacaaacacat------actcaaaatcctgctacatgcttataagaaatcagaattataatgaaaacttctatgaatc |
244 |
Q |
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| T |
55425096 |
tacatatttatacatatgcatctacaaacacatgctcaaaatcaaaatccaactaaatgcttatgtgaaattagaattttaatgaaaacttttatgaatc |
55424997 |
T |
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| Q |
245 |
a |
245 |
Q |
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| T |
55424996 |
a |
55424996 |
T |
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