View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_16 (Length: 238)
Name: NF18829_low_16
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 31340651 - 31340790
Alignment:
| Q |
17 |
agttaatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340651 |
agttaatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
31340750 |
T |
|
| Q |
117 |
gtatatcttccccacagagcaaagcataacacatcaagag |
156 |
Q |
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| T |
31340751 |
gtatatcttccccacagagcaaagcatagcacatcaagag |
31340790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 31333921 - 31334060
Alignment:
| Q |
17 |
agttaatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333921 |
agttaatactacaattaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
31334020 |
T |
|
| Q |
117 |
gtatatcttccccacagagcaaagcataacacatcaagag |
156 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
31334021 |
gtatatcttccccacagagcaaagcatagcacatcaagag |
31334060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 4684156 - 4684295
Alignment:
| Q |
17 |
agttaatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4684156 |
agttaatactacatttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
4684255 |
T |
|
| Q |
117 |
gtatatcttccccacagagcaaagcataacacatcaagag |
156 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
4684256 |
gtatatcttccccacagagcaaagcatagcacatcaagag |
4684295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 1656632 - 1656493
Alignment:
| Q |
17 |
agttaatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656632 |
agttaatgctacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatga |
1656533 |
T |
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| Q |
117 |
gtatatcttccccacagagcaaagcataacacatcaagag |
156 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
1656532 |
gtatatcttccccacagagcaaagcatagcacatcaagag |
1656493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 643939 - 643821
Alignment:
| Q |
38 |
tgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
643939 |
tgtacaaatattttgtggtttattttaggtttagtttttaataagatattgagcagcggacgacataatttcctcatgagtatatcttccccatagagca |
643840 |
T |
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| Q |
138 |
aagcataacacatcaagag |
156 |
Q |
| |
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||||||| ||||| ||||| |
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| T |
643839 |
aagcatagcacatgaagag |
643821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 643640 - 643577
Alignment:
| Q |
172 |
caataggaaatgcttaagatt-aagtctgaatttctagccccatcattttctctctgctcctcc |
234 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
643640 |
caatagcaaatgcttaagatttaagtctgaatttctagccccatcgttttctctgttctcctcc |
643577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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