View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_17 (Length: 225)
Name: NF18829_low_17
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_17 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 44609541 - 44609358
Alignment:
| Q |
26 |
ctgtcacggagaggagagacagaaaacggcggcgtcggcgacggcgaggagggagaagcaccaccgcaaaaggagagaggcacgatgaaggtgaaggtga |
125 |
Q |
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| T |
44609541 |
ctgtcacggagaggagagacagaaaacggcggcgtcggcaacggcgaggagggagaagcaccaccgcagaaggagagaggcacgatgaaggtgaaggtga |
44609442 |
T |
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| Q |
126 |
agcgcgcgagagaaaagcaaacggcgaacagggagaactgtgacgacaaggagagagaagcaaacagcggcaaggagagggaag |
209 |
Q |
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| T |
44609441 |
agcgcgcgagagaaaagcaaacggcgaacagggagaactgtgacgacaaggagagagaagcaaacggcggcaaggagagggaag |
44609358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 9022017 - 9022119
Alignment:
| Q |
26 |
ctgtcacggagaggagagacagaaaacggcggcgtcggcgacggcgaggagggagaagcaccaccgcaaaaggagagaggcacgatgaaggtgaaggtga |
125 |
Q |
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| T |
9022017 |
ctgtcacggagaggggagacagaaaacggcggcgacggagacggcgaggagggagaagcaccaccgcagaaggagagaggcacgatgaaggtgaaggtga |
9022116 |
T |
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| Q |
126 |
agc |
128 |
Q |
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| T |
9022117 |
agc |
9022119 |
T |
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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 20357386 - 20357287
Alignment:
| Q |
29 |
tcacggagaggagagacagaaaacggcggcgtcggcgacggcgaggagggagaagcaccaccgcaaaaggagagaggcacgatgaaggtgaaggtgaagc |
128 |
Q |
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| T |
20357386 |
tcacggagaggagagacagaaaacggcagcg------acggcgagcagggagaagcaccaccgtagaaggagagaggcacagtgaaggtgaaggtgaagc |
20357293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 26439586 - 26439652
Alignment:
| Q |
61 |
cggcgacggcgaggagggagaagcaccaccgcaaaag--gagagaggcacgatgaaggtgaaggtga |
125 |
Q |
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| T |
26439586 |
cggcggcggcgaggagagagaagcaccactgtggaaggagagagaggcacgatgaaggtgaaggtga |
26439652 |
T |
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Target: scaffold0014 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 11047 - 11144
Alignment:
| Q |
33 |
ggagaggagagacagaa---aacggcggcgtcggcgacggcgaggagggagaagcaccaccgcaaaaggagagaggcacgatgaaggtgaaggtgaag |
127 |
Q |
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|||||||||||| |||| ||| ||| |||||||| |||||||||| || ||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
11047 |
ggagaggagagagagaagtaaacagcgacgtcggcggcggcgaggagagaaaagcaccaccgtggaaggagagaggcacggtgaaggtgaaggcgaag |
11144 |
T |
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