View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_2 (Length: 588)
Name: NF18829_low_2
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 391 - 572
Target Start/End: Complemental strand, 3358148 - 3357952
Alignment:
| Q |
391 |
taaacacagctattcattagttgaagtctatggtacagaaaagcctaagtaccaaaacaaggtacttgaacttgtttggattgccaaaatgtctt----- |
485 |
Q |
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| T |
3358148 |
taaacacagctattcattagtcgaagtcta--gtacagaaaagcttaagcacaaaaacaaggtacttgaacttgtttggattgccaaaattgcttgcaag |
3358051 |
T |
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| Q |
486 |
------------tgatgaaaacattgaaatgaaatgacagatgctgtagtgtcatttgttgtgggggaactctgcaaatttgttaaagaagaaggaact |
572 |
Q |
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| T |
3358050 |
agttaacctgattgatgaaaacattgaaatgaaatgacagatgctatagtgtcatttgttgtgggggaactctgcaattttgtaaaagaagaaggaact |
3357952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 3359233 - 3359144
Alignment:
| Q |
5 |
tcacaaataatttttgtgagaagggaccagtgatagaaacagaaagacaagtatactatgtatagataaagttggtattgtgattcaagt |
94 |
Q |
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| T |
3359233 |
tcacaaataatttttgtgagaagggaccagtgaaagaaacagaaagacaagtatactatgtatagataaagttggtattgtaattcaagt |
3359144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 3200409 - 3200494
Alignment:
| Q |
485 |
ttgatgaaaacattgaaatgaaatgacagatgctgtagtgtcatttgttgtgggggaactctgcaaatttgttaaagaagaaggaa |
570 |
Q |
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| T |
3200409 |
ttgatgaaaacattgaaatgaaatgacagatgctgtagtgtcatttgttttggaggaactctctaaatttgtaaaagaagaaggaa |
3200494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 3358351 - 3358300
Alignment:
| Q |
121 |
gaaaataatatatcaaagaccaagactcttggttactctcacaagtcacact |
172 |
Q |
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| T |
3358351 |
gaaaataatatatcaaagaccaagactcttggttactctcacaagtcacact |
3358300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 479
Target Start/End: Original strand, 3200351 - 3200385
Alignment:
| Q |
445 |
aaacaaggtacttgaacttgtttggattgccaaaa |
479 |
Q |
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| T |
3200351 |
aaacaaggtacttgaacttgtttggattgccaaaa |
3200385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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