View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_3 (Length: 452)
Name: NF18829_low_3
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 38721358 - 38721783
Alignment:
| Q |
11 |
caaaggaaatgatgcagagcgtgtgatactagatgagttagctagaagagtagtgttgtgtggtgcatgtgtgaaaaaacatacaaaatgtggtaaaggg |
110 |
Q |
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| T |
38721358 |
caaaggaaatgatgcagagcgtgtgatactagatgagttagctagaagagtagtgttgcgtggtgcatgtgtgaaaaaacatacaaaatgtggtaaaggg |
38721457 |
T |
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| Q |
111 |
ttgccacataagaaacaattggtaatgattggtgctgctggaattttacgttgggggaaatcaaataaaagaaatgttgtttgtaaagaggctgaggttg |
210 |
Q |
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| T |
38721458 |
ttgccacataagaaacaattggtaatgattggtgctgctggaattttacgttgggggaaatcaaataaaagaaatgttgtttgtaaagaggctgaggttg |
38721557 |
T |
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| Q |
211 |
gaccaagtgaaagatttcgatggaaccgtaggaggaagtttgatgttgatgagttaggaatgttttatgttgttactgcaaaaaataaggaggtgcattt |
310 |
Q |
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| T |
38721558 |
gaccaagtgaaagatttcgatggaaccgtaggaggaagtttgatgttgatgagttaggaatgttttatgttgttactgcaaaaaataaggaggtgcattt |
38721657 |
T |
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| Q |
311 |
tgtttgtgaaggtggggttgaaatggctgagttatgggtaagagggattagattagtaacaagagaagccatttttggttctagagctaatactggctga |
410 |
Q |
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| T |
38721658 |
tgtttgtgaaggtggggttgaaatggctgagttatgggtaagagggattagattagtaacaagagaagccatttttggttctagagctaatactggctga |
38721757 |
T |
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| Q |
411 |
gggaatatggttatggatagaaattc |
436 |
Q |
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| T |
38721758 |
gggaatatggttatggatagaaattc |
38721783 |
T |
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