View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18829_low_4 (Length: 418)
Name: NF18829_low_4
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18829_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 8598935 - 8598579
Alignment:
| Q |
12 |
aagaaggctaaagataaagaggttcttaacaattttgtagccaatttatttgaagtaaatcctagtcatgaagggttgatatttcatatggtcaacttga |
111 |
Q |
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| T |
8598935 |
aagaaggctaaagataaagaggttcttaacaattttgtagccaatttatttgaagtaaatcctagtcatgaagggttgatatttcatatggtcaacttga |
8598836 |
T |
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| Q |
112 |
aatccaaattgaaatggatttatctgccatcaaaatgaaaattaattcctttcagagatacattacagctgaactaattaatttccaaccagccaaacag |
211 |
Q |
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| T |
8598835 |
aatccaaattgaaatggatttatctgccatcaaaatgaaaattaattcctttcagagatacattacagctgaactaattaatttccaaccagacaaacag |
8598736 |
T |
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| Q |
212 |
caaaattcaacaccaagtaaagagaaaatcaaaatagatatatagaacccataacattgttgtaccagaatcaagagctttatcnnnnnnnnnnnnntat |
311 |
Q |
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| T |
8598735 |
caaaattcaacaccaagtaaagagaaaaacaaaatagatatatag-acccataac---catgtaccagaatcaagagctttat----aaaaaaaaaaaaa |
8598644 |
T |
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| Q |
312 |
tacatgtttatgtaagaaaaccaatgggacttgcataagcagactatgcaagagaacctacccat |
376 |
Q |
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| T |
8598643 |
tacatgtttatgtaagaaaaccgatgggacttacataaacagactttgcaagagaatctatccat |
8598579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 8575412 - 8575290
Alignment:
| Q |
144 |
aaatgaaaattaattcctttcagagatacattacagctgaactaattaatttccaaccagccaaacagcaaaattcaacaccaagtaaagagaaaatcaa |
243 |
Q |
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| T |
8575412 |
aaatgaaaattaattcctttctgagatacataacaatggcactaattaatttccagccagccagacagcaaaaatcaacaccaagtacagagaaaatcaa |
8575313 |
T |
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| Q |
244 |
aatagatatatagaacccataac |
266 |
Q |
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| T |
8575312 |
agtagatatatagaacccataac |
8575290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 8567307 - 8567251
Alignment:
| Q |
12 |
aagaaggctaaagataaagaggttcttaacaattttgtagccaatttatttgaagta |
68 |
Q |
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| T |
8567307 |
aagaaggctaaagataaagaggcacttaacaattttgtagccagtttatttgaagta |
8567251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 8575247 - 8575187
Alignment:
| Q |
315 |
atgtttatgtaagaaaaccaatgggacttgcataagcagactatgcaagagaacctaccca |
375 |
Q |
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| T |
8575247 |
atgtttatgttagaaaacagatgagacttacataagcagactctgcaagaggacccaccca |
8575187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 21521111 - 21521169
Alignment:
| Q |
26 |
taaagaggttcttaacaattttgtagccaatttatttgaagtaaatcctagtcatgaag |
84 |
Q |
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| T |
21521111 |
taaagaggttctaaataactttgtagccactttatttaaagcaaatcctagtcttgaag |
21521169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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