View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18829_low_7 (Length: 331)

Name: NF18829_low_7
Description: NF18829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18829_low_7
NF18829_low_7
[»] chr1 (1 HSPs)
chr1 (16-309)||(38041574-38041861)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 38041861 - 38041574
Alignment:
Q  16 tgtggctccaaaaattatcaatactcctctctttgtttcggtattggatggcataagaatttggagaatagaaggtaatggtgagtattttgtaaaaagg 115  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38041861 tgtggctccaaaaattatcaatactcctctct--gtttcggtattggatggcataagaatttggagaatagaagataatggtgagtattttgtaaaaagg 38041764  T
Q  116 gcttaccgtttgtgtttacaggagcttaattatagaacatctcatttcaagataaatggctcagaatttgatttggaagcttaaagcacctctgaaggtg 215  Q
    |||||||||||||||| |||||||||||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38041763 gcttaccgtttgtgttcacaggagctta----tagaacatctcatttcaagataaatggcccagaatttgatttggaagcttaaagcacctctgaaggtg 38041668  T
Q  216 atgaacatgattttgtgtgtgtgggaagtgtcttccaactcacatgagacttcgagataaagttgtgaattgtccaaattgtgaactatatgta 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38041667 atgaacatgattttgtgtgtgtgggaagtgtcttccaactcacatgagacttcgagataaaattgtgaattgtccaaattgtgaactatatgta 38041574  T

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