View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1882_low_2 (Length: 562)
Name: NF1882_low_2
Description: NF1882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1882_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Original strand, 52250433 - 52250963
Alignment:
| Q |
13 |
aaaattcaactgtttcattcattcattttctgtttcaatnnnnnnn-tctatcccccac--tttgtatannnnnnnattgaactaataacatcacatcac |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||||| |
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| T |
52250433 |
aaaattcaactgtttcattcattcattttctgtttcaataaaaaaaatctatccccccccctttgtatatttttttattgaactaataacatcacatcac |
52250532 |
T |
|
| Q |
110 |
taatgtctcttctcaaatgtgactacaacaaacaatatatcatcatcatcatcatgacataacagaaaacatnnnnnnnnncctataaaaaagtattgcc |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
52250533 |
taatgtctcttctcaaatgtgactacaacaaacaatatatcatcatcatcat---gacataacagaaaacataaaaaaa--cttataaaaaagtattgcc |
52250627 |
T |
|
| Q |
210 |
aacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcagcaacagatttcacaccattctcagcaaccatttcatcatcaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52250628 |
aacacgaccacgatgcaacaaatcatgagcaatattatccctagcttgagcagcagcaacagatttcacaccattctcagcaaccatttcatcatcaaaa |
52250727 |
T |
|
| Q |
310 |
agttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52250728 |
agttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatct |
52250827 |
T |
|
| Q |
410 |
tcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgcatccttactcagcttctgaatatcttccactttctcattaaacgc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52250828 |
tcacctctatcctcttctgcaaacaagaccaccttcctttcacctttgcaaacgcatccttactcagcttctgaatatcttccactttctcattaaacgc |
52250927 |
T |
|
| Q |
510 |
gtgctgtgtccaagtaagattctgatgtgtataagg |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
52250928 |
gtgctgtgtccaagtaagattctgatgtgtataagg |
52250963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 239 - 545
Target Start/End: Original strand, 52262300 - 52262605
Alignment:
| Q |
239 |
caatattatccctagcttgagcagcagcaacagatttcacaccattctcagcaaccatttcatcatcaaaaagttcaaaattccatgcaggatccatctt |
338 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||||| | ||||||||||||| || |||||||||| |
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|
| T |
52262300 |
caatattatccctagcttgaacagcagcaacagatctcgcaccattctcagccaccatttcatcatcaaacaattcaaaattccatcca-gatccatctt |
52262398 |
T |
|
| Q |
339 |
ctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagac |
438 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||| | || |||||| |||||||| ||||||||| ||||||| |||||||| ||| |
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|
| T |
52262399 |
ctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttgcaaacaggac |
52262498 |
T |
|
| Q |
439 |
caccttcctttcacctttgcaaacgcatccttactcagcttctgaatatcttccactttctcattaaacgcgtgctgtgtccaagtaagattctgatgtg |
538 |
Q |
| |
|
||||| ||||||| | ||||||| ||||| ||| | | |||||||||| || || |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
52262499 |
cacctccctttcagccttgcaaatgcatctttagcaatcctctgaatatcctcaaccttctcattaaacgcgtgctgcgtccaagtaagattcttatgtg |
52262598 |
T |
|
| Q |
539 |
tataagg |
545 |
Q |
| |
|
|||||| |
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|
| T |
52262599 |
cataagg |
52262605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 451
Target Start/End: Complemental strand, 3698992 - 3698867
Alignment:
| Q |
326 |
caggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctctt |
425 |
Q |
| |
|
|||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||| ||| ||||||| || | | |||||| || |||| || |
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|
| T |
3698992 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
3698893 |
T |
|
| Q |
426 |
ctgcaaacaagaccaccttcctttca |
451 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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|
| T |
3698892 |
ctgcaaacaagaccacctacctttca |
3698867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 326 - 451
Target Start/End: Complemental strand, 3702680 - 3702555
Alignment:
| Q |
326 |
caggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctctt |
425 |
Q |
| |
|
|||||||||| |||||| |||| |||||||| |||||||||||||||||||||| ||| || ||||||| || | || |||||| || |||| || |
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| T |
3702680 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtcctttt |
3702581 |
T |
|
| Q |
426 |
ctgcaaacaagaccaccttcctttca |
451 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
3702580 |
ctgcaaacaagaccacctacctttca |
3702555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 395
Target Start/End: Complemental strand, 17602953 - 17602848
Alignment:
| Q |
290 |
caaccatttcatcatcaaaaagttcaaaattccatgcaggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaac |
389 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| || |||||| | |||||| | || |||||||||||||| | |||||||||||||||||||| |
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|
| T |
17602953 |
caaccatttcatcatcaaaaacctcaaacttccattcatcatccatttcttcattcataatctcacaaatattatgaagcacacaacaagcaccaagaac |
17602854 |
T |
|
| Q |
390 |
accagg |
395 |
Q |
| |
|
| |||| |
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|
| T |
17602853 |
aacagg |
17602848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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