View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-3-Insertion-17 (Length: 41)
Name: NF1883-3-Insertion-17
Description: 454-NF1883-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-3-Insertion-17 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 41; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 5161028 - 5161068
Alignment:
| Q |
1 |
cttggaaggagatattccaattcaattgtgtcgattaaaaa |
41 |
Q |
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| T |
5161028 |
cttggaaggagatattccaattcaattgtgtcgattaaaaa |
5161068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4856082 - 4856042
Alignment:
| Q |
1 |
cttggaaggagatattccaattcaattgtgtcgattaaaaa |
41 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4856082 |
cttggaaggagatattccaattcaattgtgtcggttaaaaa |
4856042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 5214833 - 5214872
Alignment:
| Q |
2 |
ttggaaggagatattccaattcaattgtgtcgattaaaaa |
41 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
5214833 |
ttggaaggagatattccaattcaattgtgtcggttaaaaa |
5214872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 7143175 - 7143214
Alignment:
| Q |
2 |
ttggaaggagatattccaattcaattgtgtcgattaaaaa |
41 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| |
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| T |
7143175 |
ttggaaggagatattccaattcaattgtgtcggttaaaaa |
7143214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 32
Target Start/End: Original strand, 5183273 - 5183300
Alignment:
| Q |
5 |
gaaggagatattccaattcaattgtgtc |
32 |
Q |
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| T |
5183273 |
gaaggagatattccaattcaattgtgtc |
5183300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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