View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1883-3-Insertion-2 (Length: 276)
Name: NF1883-3-Insertion-2
Description: 454-NF1883-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-3-Insertion-2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 26357641 - 26357924
Alignment:
| Q |
3 |
atacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgtta |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357641 |
atacataaccaagagtaagaactaagaactgatgcaatacctaaagattcaacaagctattactaacactccaaatcaaaagggtagcatccaattgtta |
26357740 |
T |
|
| Q |
103 |
tactaacataccaaatcaaaagttggttgtac----------aacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactg |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357741 |
tactaacataccaaatcaaaagttggttgtacaacactgataaacactgatatcaaacatgtaagctagtaatatccaaatcactgtgttggatggactg |
26357840 |
T |
|
| Q |
193 |
agaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26357841 |
agaagacaatttcaaatatatgccagaaacaactcccaggttaatccatccttcacaatgttatcataaagattctagagataa |
26357924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 6684891 - 6685125
Alignment:
| Q |
25 |
taagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaag |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
6684891 |
taagaactgatgcagtacctaaagattcaacaagctatacctaacactctaaatcaaaagggcagcatccaactgttatactaatattccaaatcaaaag |
6684990 |
T |
|
| Q |
125 |
ttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaa |
224 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
6684991 |
ttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactatgttgaatggactgagaagacaattttgaatatatgccaaaaacaa |
6685090 |
T |
|
| Q |
225 |
ctcccaggttaatccatccttcacaatgttatcat |
259 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
6685091 |
ctcccaagttaatccatacttcacaatgtcatcat |
6685125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 30821866 - 30822069
Alignment:
| Q |
25 |
taagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaag |
124 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
30821866 |
taagaactgattcagtacctaaatattcaacaagctattactaacactcttaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaag |
30821965 |
T |
|
| Q |
125 |
ttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaa |
224 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
30821966 |
ttggttgtacaaaactgatatcatacatgtaagctagtaatatccaaataactatgttgaatggattgagaagacaattttgaatatatgccagaaaaaa |
30822065 |
T |
|
| Q |
225 |
ctcc |
228 |
Q |
| |
|
|||| |
|
|
| T |
30822066 |
ctcc |
30822069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 30812604 - 30812796
Alignment:
| Q |
25 |
taagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaag |
124 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| ||||||| |||||| |||| | ||||||| |||||||||||||| |||||||||| |
|
|
| T |
30812604 |
taagaactgattcagtacctaaagattcaacaagctattactaacactcttaatcaacagggcaacatccaactgttatactaacatttcaaatcaaaaa |
30812703 |
T |
|
| Q |
125 |
ttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgcca |
217 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
30812704 |
ttggttgtacaaaactaatatcatacatgtaagctagtaatatccaaataactatgttgaatggactgagaagacaattttgaataaatgcca |
30812796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 12592570 - 12592727
Alignment:
| Q |
26 |
aagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaagt |
125 |
Q |
| |
|
||||| ||||| | ||||||||||||||| |||||||||| |||| | |||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
12592570 |
aagaattgatgtagtacctaaagattcaataagctattactaacaaactaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaagt |
12592669 |
T |
|
| Q |
126 |
tggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttg |
183 |
Q |
| |
|
||||||||||| ||||||| || ||||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
12592670 |
tggttgtacaaaactgataacatacatgtaagctagtaatatccaaataactatgttg |
12592727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 51759491 - 51759719
Alignment:
| Q |
25 |
taagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaag |
124 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
51759491 |
taagaactgatgcagtatctaaagattcaacaagctattactaacactctaaatcaaaagggcagcatccaactgttatactaacattccaaatcaaaag |
51759590 |
T |
|
| Q |
125 |
ttggttgtacaacactgatatcaaacatgtatgctagtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaacaa |
224 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||||| |||| ||| ||||| ||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
51759591 |
ttggttgtacaaaactgatatcatacatgtaagctagtaatatctaaataactatgttgaatggattgagaagacaattttgaatatataccagaaacaa |
51759690 |
T |
|
| Q |
225 |
ctcccaggttaatccatccttcacaatgt |
253 |
Q |
| |
|
|||| | |||||||||| ||||||||||| |
|
|
| T |
51759691 |
ctccgaagttaatccatacttcacaatgt |
51759719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 25 - 249
Target Start/End: Original strand, 27810616 - 27810826
Alignment:
| Q |
25 |
taagaactgatgcaatacctaaagattcaacaagctattaccaacactccaaatcaaaagggtagcatccaattgttatactaacataccaaatcaaaag |
124 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| || |||||| |||||||||||| |
|
|
| T |
27810616 |
taagaactgatgcagtacctaaagattcaacaagctattactaacactctaaatcaaaagggcag----------------taacattccaaatcaaaag |
27810699 |
T |
|
| Q |
125 |
ttggttgtacaacactgatatcaaacatgtatgcta--gtaatatccaaatcactgtgttggatggactgagaagacaatttcaaatatatgccagaaac |
222 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||| ||||||||||||| ||| ||||| |||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
27810700 |
ttggttgtacaaaactgatatcatacatgtaagctatagtaatatccaaataactatgttgaatggactgagaatacaattttgaatataagccagaaaa |
27810799 |
T |
|
| Q |
223 |
aactcccaggttaatccatccttcaca |
249 |
Q |
| |
|
|||||||| |||||||||| ||||||| |
|
|
| T |
27810800 |
aactcccaagttaatccatacttcaca |
27810826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2156 times since January 2019
Visitors: 844