View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1883-3-Insertion-5 (Length: 190)
Name: NF1883-3-Insertion-5
Description: 454-NF1883-3
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-3-Insertion-5 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 7e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 7e-94
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7805068 - 7804879
Alignment:
| Q |
1 |
aatacgatataaattataacataaagcaaaaaactcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7805068 |
aatacgatataaattataacataaagcaaaaaactcaatatgacaatgattaaagtcccactttctcatccaccaacatgaggttcatacatgttatctc |
7804969 |
T |
|
| Q |
101 |
gttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattg |
190 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7804968 |
gttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaacagacaccattg |
7804879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7834465 - 7834275
Alignment:
| Q |
1 |
aatacgatataaattataacataaagcaaaaaa-ctcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatct |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7834465 |
aatacgatataaattataacataaagcaaaaaaactcaatatgacaatgattaaagacccactttctcatccaccaacaggaggttcatacatgttatct |
7834366 |
T |
|
| Q |
100 |
cgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattg |
190 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7834365 |
cgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaccagacaccattg |
7834275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 7785005 - 7784814
Alignment:
| Q |
1 |
aatacgatataaattataacataaagcaaaaaa--ctcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7785005 |
aatacgatataaattataacataaagcaaaaaaaactcaatatgacaatgattaaagtcccactttctcatccaccaacatgaggttcatatatgttatc |
7784906 |
T |
|
| Q |
99 |
tcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattg |
190 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7784905 |
tcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaacagacaccattg |
7784814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2167 times since January 2019
Visitors: 844