View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-Insertion-1 (Length: 515)

Name: NF1883-Insertion-1
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-Insertion-1
NF1883-Insertion-1
[»] chr7 (7 HSPs)
chr7 (205-515)||(2787119-2787427)
chr7 (7-169)||(2786948-2787109)
chr7 (89-172)||(38372525-38372608)
chr7 (117-172)||(41677369-41677424)
chr7 (118-172)||(34922927-34922981)
chr7 (113-169)||(12473197-12473253)
chr7 (127-163)||(21249161-21249197)
[»] chr5 (13 HSPs)
chr5 (326-515)||(19578167-19578356)
chr5 (87-163)||(11163314-11163390)
chr5 (85-169)||(26002960-26003044)
chr5 (103-172)||(29922225-29922294)
chr5 (95-175)||(17128251-17128331)
chr5 (95-167)||(27981953-27982025)
chr5 (85-167)||(16721990-16722072)
chr5 (97-175)||(24030190-24030268)
chr5 (131-169)||(36106778-36106816)
chr5 (127-175)||(7984110-7984158)
chr5 (103-172)||(12467245-12467314)
chr5 (104-172)||(1473338-1473406)
chr5 (89-169)||(15413959-15414039)
[»] chr3 (12 HSPs)
chr3 (89-162)||(21296733-21296806)
chr3 (85-164)||(23555447-23555526)
chr3 (103-173)||(24842142-24842212)
chr3 (113-154)||(29830824-29830865)
chr3 (89-172)||(22809229-22809313)
chr3 (89-157)||(50022007-50022075)
chr3 (125-172)||(5129851-5129898)
chr3 (88-163)||(10272088-10272163)
chr3 (113-167)||(28623275-28623329)
chr3 (113-163)||(30499957-30500007)
chr3 (129-175)||(42956212-42956258)
chr3 (91-147)||(47520426-47520482)
[»] chr8 (9 HSPs)
chr8 (85-171)||(13131393-13131479)
chr8 (125-172)||(1089016-1089063)
chr8 (85-144)||(2019713-2019772)
chr8 (108-163)||(11988183-11988238)
chr8 (103-170)||(16972395-16972462)
chr8 (90-172)||(32131408-32131490)
chr8 (126-175)||(13265488-13265537)
chr8 (105-169)||(19327850-19327914)
chr8 (87-163)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (87-169)||(18424316-18424398)
chr4 (126-169)||(46650275-46650318)
chr4 (89-163)||(29877606-29877680)
chr4 (94-175)||(43740108-43740189)
chr4 (119-167)||(22303093-22303141)
chr4 (87-167)||(47202791-47202871)
chr4 (87-143)||(48721942-48721998)
chr4 (89-172)||(23297405-23297488)
chr4 (89-163)||(43415334-43415408)
chr4 (113-167)||(46176019-46176073)
chr4 (87-172)||(948037-948122)
chr4 (85-154)||(10794963-10795032)
chr4 (96-169)||(29996678-29996751)
chr4 (91-152)||(31022371-31022432)
chr4 (103-171)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (87-167)||(32615455-32615535)
chr6 (88-165)||(21871193-21871269)
chr6 (103-163)||(28758366-28758426)
chr6 (113-163)||(4272373-4272423)
chr6 (113-163)||(22816630-22816680)
chr6 (87-172)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (95-172)||(33321439-33321516)
chr2 (87-172)||(4090454-4090539)
chr2 (118-163)||(12683651-12683696)
chr2 (89-146)||(17797329-17797386)
chr2 (113-169)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (85-154)||(16225472-16225541)
chr1 (103-175)||(26435208-26435279)
chr1 (89-172)||(1265729-1265812)
chr1 (88-163)||(35897668-35897743)
chr1 (127-174)||(41003392-41003439)
chr1 (88-169)||(15631870-15631951)
chr1 (95-172)||(35590103-35590180)
chr1 (90-175)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (113-167)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (86-152)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 205 - 515
Target Start/End: Original strand, 2787119 - 2787427
Alignment:
Q  205 gcatacaaaaaatatcataaaatattaaatcacataaacttcacattgattattttgatacaaacgtcaatggataatataatcgaccaagaaaagtaca 304  Q
    |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2787119 gcatacgaaaaatatcacaaaatattaaattacataaacttcacattgattattttgatacaaacgtcaatggataatataattgaccaagaaaagtaca 2787218  T
Q  305 aacaaatatacaaattaaatcaaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgct 404  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787219 aacaaatatacaaattaaatcaaacatat--actaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgct 2787316  T
Q  405 acaaacaattccaaccatcaatggaaaactctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787317 acaaacaattccaaccatcaatggaaaactctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaa 2787416  T
Q  505 gcgatcgccac 515  Q
    |||||||||||    
T  2787417 gcgatcgccac 2787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 2786948 - 2787109
Alignment:
Q  7 aactgtcacgtaaaaaatattgcaaatttgttccaaacacgcaagttccaatcaaatccattttgtaaataagtaaccgtccgtttgaattgactaattt 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2786948 aactgtcacgtaaaaaatattgcaaatttgttccaaacactcaagttccaatcaaatccattttgtaaataagtaaccgtccgtttgaattgacttattt 2787047  T
Q  107 tttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787048 tttaga-tatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 2787109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 38372525 - 38372608
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||| ||||||| |||||| || |||| |||||||  ||||||||||||||||| | | |||||| |||||||| ||||||||    
T  38372525 gtttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagctcttatgtattattcataagtttgtcaa 38372608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 41677369 - 41677424
Alignment:
Q  117 acaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||||  |||||||||||||||| |||| |||||| |||||||| ||||||||    
T  41677369 acaaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaa 41677424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 34922927 - 34922981
Alignment:
Q  118 caaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    |||||||  ||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  34922927 caaaacaacttatgcaaataaataagcttttatgtattattcataagtttgtcaa 34922981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 12473197 - 12473253
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||| |||||||  ||||||||| ||||||||||| |||||| |||||||| |||||    
T  12473197 ttatgcaaaacaacttatgcaaacaaataagtttttatgtattattcataagtttgt 12473253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 21249161 - 21249197
Alignment:
Q  127 ttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  21249161 ttatgcaaataaataagtttttatgtattattcataa 21249197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 326 - 515
Target Start/End: Complemental strand, 19578356 - 19578167
Alignment:
Q  326 aaacatatatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaa 425  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||  ||||||||||||||    
T  19578356 aaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaa 19578257  T
Q  426 tggaaaactctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccac 515  Q
     |||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||    
T  19578256 aggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccac 19578167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 11163390 - 11163314
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||||| ||||||| ||||||||| |||| |||||||  ||||| |||| |||||||||| |||||||||||||||    
T  11163390 ccgtttggattgacttattttttagcttatgcaaaacagcttatgtaaatcaataagtttttatgtatgattcataa 11163314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 26002960 - 26003044
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    ||||||||| ||| ||| |||||  || |||||||||||| |||||||||||||||||||||| |||||| ||| |||| |||||    
T  26002960 gtccgtttggattaacttattttagagcttatacaaaacagtttatgcaaataaataagtttttatgtattatttataagtttgt 26003044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 29922294 - 29922225
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    |||||| || |||| ||||||| |||||||||||||||||||||| |||||| ||||||||  |||||||    
T  29922294 atttttgagcttatgcaaaacagtttatgcaaataaataagtttttatgtattattcataagcttgtcaa 29922225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 17128251 - 17128331
Alignment:
Q  95 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    ||||||| |||||| || |||| |||||||  ||||||||||||||||| ||| |||||| ||||||||| || |||||||    
T  17128251 attgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataaacttatcaaagt 17128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 27982025 - 27981953
Alignment:
Q  95 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||||| |||||| |  ||||||||||||| ||||| |||||||||| |||| |||||| ||||||||||||    
T  27982025 attgacttatttttgaacttatacaaaacatcttatgaaaataaataaatttttatgtattattcataaattt 27981953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 16721990 - 16722072
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    |||||||||||||  || |||||  || ||||| |||| | |||||||||||||||||||||| |||||| ||| ||||||||    
T  16721990 gtccgtttgaattagcttattttaaagcttatagaaaataatttatgcaaataaataagtttttatgtattatttataaattt 16722072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 24030190 - 24030268
Alignment:
Q  97 tgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    ||||| |||||| || ||||||||||||  |||| |||||||||||| ||| |||||| ||||||||  ||||||||||    
T  24030190 tgacttatttttaagcttatacaaaacagcttatccaaataaataagcttttatgtattattcataagcttgtcaaagt 24030268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 36106816 - 36106778
Alignment:
Q  131 gcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  36106816 gcaaataaataagtttttatgtatgattcataaatttgt 36106778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 7984110 - 7984158
Alignment:
Q  127 ttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    |||||||||||| |||||||| |||||| |||||||| |||||||||||    
T  7984110 ttatgcaaataactaagtttttatgtattattcataagtttgtcaaagt 7984158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 12467245 - 12467314
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    |||||| || |||| ||||| || ||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  12467245 atttttgagtttattcaaaaaatgttatgcaaataaataagcttttatgtattattcataagcttgtcaa 12467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 1473338 - 1473406
Alignment:
Q  104 ttttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||| || ||||||| ||||  ||||||||||||||||| ||| |||||| ||||||||  |||||||    
T  1473338 tttttgagcttatacagaacaacttatgcaaataaataagcttttatgtattattcataagcttgtcaa 1473406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 15413959 - 15414039
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    ||||| ||||||| |||||  || |||| |||||||  |||||||||||||||||| || |||||| ||| |||| |||||    
T  15413959 gtttggattgacttattttagagcttatgcaaaacagcttatgcaaataaataagtattaatgtattattgataagtttgt 15414039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 21296733 - 21296806
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcata 162  Q
    ||||| ||||||| |||||| ||||||| ||||||| |||||||||||||||||||||| || ||| |||||||    
T  21296733 gtttggattgacttatttttgagattatgcaaaacaatttatgcaaataaataagtttttatctattattcata 21296806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 23555447 - 23555526
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaa 164  Q
    ||||||||| |||| || |||||| || |||||| ||||| |||||||||||||||||| ||| |||||| |||| ||||    
T  23555447 gtccgtttggattggcttatttttgagcttatacgaaacagtttatgcaaataaataagcttttatgtattattcgtaaa 23555526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 24842212 - 24842142
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaa 173  Q
    |||||| || ||||| ||||||  |||||||||||||||| |||| |||||| |||||||| |||||||||    
T  24842212 atttttaaggttataaaaaacaacttatgcaaataaataaatttttatgtattattcataagtttgtcaaa 24842142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 29830865 - 29830824
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtat 154  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  29830865 ttatacaaaacagtttatgcaaataaataagtttttatgtat 29830824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 22809313 - 22809229
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataag-ttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||||||||| |||||| || |||| |||||||  ||||||||||||||||| |||| || ||| ||||||||  |||||||    
T  22809313 gtttgaattgacttatttttgaggttatgcaaaacagcttatgcaaataaataagctttttatatattattcataagcttgtcaa 22809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 50022075 - 50022007
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgat 157  Q
    ||||| |||| || |||||  ||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  50022075 gtttggattggcttattttagagattatgcaaaacagtttatgcaaataaataagctttgatgtatgat 50022007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 5129898 - 5129851
Alignment:
Q  125 ttttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  5129898 ttttatgcaaataaataagttttaatgtattattcataagcttgtcaa 5129851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 10272088 - 10272163
Alignment:
Q  88 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||| ||||||| ||||||||| |||| |||||||  | ||||||||||||||  ||| |||||| ||||||||    
T  10272088 cgtttggattgacttattttttagcttatgcaaaacaactcatgcaaataaataaacttttatgtattattcataa 10272163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 28623329 - 28623275
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  28623329 ttatagaaaacaacttatgcaaataaataagtttttatgtattatttataaattt 28623275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 30499957 - 30500007
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||||||||| ||||||||||||||||| |||| |||||| ||| ||||    
T  30499957 ttatacaaaacagtttatgcaaataaataaatttttatgtattatttataa 30500007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 42956258 - 42956212
Alignment:
Q  129 atgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    ||||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  42956258 atgcaaataaataagtttttatgtattattcataaacttgtcgaagt 42956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 47520426 - 47520482
Alignment:
Q  91 ttgaattgactaattttttagattatacaaaacattttatgcaaataaataagtttt 147  Q
    ||||||||||| |||||| || ||||| |||| | |||||||| |||||||||||||    
T  47520426 ttgaattgacttatttttgagtttataaaaaataatttatgcatataaataagtttt 47520482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 13131393 - 13131479
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtca 171  Q
    ||||||||| |||  || ||||||||| |||| |||||||  ||||||||||||||||| ||| |||||| |||||||| |||||||    
T  13131393 gtccgtttggatttgcttattttttagcttatgcaaaacaaattatgcaaataaataagcttttatgtattattcataagtttgtca 13131479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 1089016 - 1089063
Alignment:
Q  125 ttttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||||||||||||||||||| |||||| ||||||||  |||||||    
T  1089016 ttttatgcaaataaataagttttaatgtattattcataagcttgtcaa 1089063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 2019772 - 2019713
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagt 144  Q
    ||||||||| ||||||| |||||  || |||| |||||||| ||||||||||||||||||    
T  2019772 gtccgtttggattgacttattttagagcttatgcaaaacatcttatgcaaataaataagt 2019713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 11988183 - 11988238
Alignment:
Q  108 ttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||| ||||| |||||| |||||||||||||||||||||| |||||| ||| ||||    
T  11988183 ttagcttatataaaacaatttatgcaaataaataagtttttatgtattatttataa 11988238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 16972462 - 16972395
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtc 170  Q
    ||||||||| |||| ||||||| ||| |||||||||||||| ||  |||||| |||||||| ||||||    
T  16972462 attttttagcttatgcaaaacaatttttgcaaataaataagcttgtatgtattattcataagtttgtc 16972395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 172
Target Start/End: Original strand, 32131408 - 32131490
Alignment:
Q  90 tttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    |||| ||||||| |||||| || |||| |||||||  ||||||||||||||||| ||| ||| || |||| ||| ||||||||    
T  32131408 tttggattgacttatttttgagcttatgcaaaacagcttatgcaaataaataagcttttatgcattattcctaagtttgtcaa 32131490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 13265488 - 13265537
Alignment:
Q  126 tttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    |||||||||||||||||| ||| |||||| ||||||||  ||||||||||    
T  13265488 tttatgcaaataaataagcttttatgtattattcataagcttgtcaaagt 13265537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 19327850 - 19327914
Alignment:
Q  105 tttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    ||||||| |||| |||||||  ||||||||||||||||  ||| |||||| |||||||| |||||    
T  19327850 tttttagcttatgcaaaacaacttatgcaaataaataaacttttatgtattattcataagtttgt 19327914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 42102072 - 42102148
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||||| ||| ||| |||||  || ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||    
T  42102072 ccgtttggattaacttattttagagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataa 42102148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 18424398 - 18424316
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    ||||||||||||||  |||||| || |||| ||||||| ||||| |||||||||||| ||| |||||| ||||||||| ||||    
T  18424398 ccgtttgaattgacatatttttgagcttatgcaaaacaatttatacaaataaataagcttttatgtattattcataaacttgt 18424316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 46650275 - 46650318
Alignment:
Q  126 tttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  46650275 tttatgcaaataaataagctttcatgtattattcataaatttgt 46650318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 29877606 - 29877680
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||| |||| || |||||| || |||| ||||||| |||||||||||||||||| ||| |||||| ||||||||    
T  29877606 gtttggattggcttatttttgagcttatgcaaaacaatttatgcaaataaataagcttttatgtattattcataa 29877680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 43740189 - 43740108
Alignment:
Q  94 aattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    |||||||| |||||| |  |||||||||||| |||||| ||||||||||||||| |  ||| ||||||||| ||||| ||||    
T  43740189 aattgacttatttttaaatttatacaaaacaatttatgaaaataaataagtttttacatattattcataaacttgtctaagt 43740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 22303093 - 22303141
Alignment:
Q  119 aaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    |||||| |||||||||||||||||||||| |||||| ||| ||||||||    
T  22303093 aaaacagtttatgcaaataaataagtttttatgtattatttataaattt 22303141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 47202791 - 47202871
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||||| ||| ||| ||||| ||| ||||| ||||||  ||||||||||||||||||||| |||||| | | ||||||||    
T  47202791 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattacttataaattt 47202871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 48721998 - 48721942
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataag 143  Q
    ||||||||||||||| ||||||||| ||||| |||| | ||||| ||||||||||||    
T  48721998 ccgtttgaattgacttattttttagcttataaaaaataatttatacaaataaataag 48721942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 23297405 - 23297488
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||| |||| || |||||| || |||| ||||| |  ||||||||||||||||| ||| |||||| |||||||| ||||||||    
T  23297405 gtttggattggcttatttttgagcttatgcaaaatagcttatgcaaataaataagcttttatgtattattcataagtttgtcaa 23297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 43415408 - 43415334
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||||||||||| |||||| || |||   ||||||  || |||||||||||||||||| |||||| ||||||||    
T  43415408 gtttgaattgacttatttttgagcttaagtaaaacaacttctgcaaataaataagtttttatgtattattcataa 43415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 46176073 - 46176019
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  46176073 ttatataaaacagcttatgcaaataaataagtttttatgtattatttataaattt 46176019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 948037 - 948122
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||| | ||||| | ||||||| |||| ||||| |  ||||| ||||||||||| ||| |||||| |||||||| ||||||||    
T  948037 ccgtttggaatgacttactttttagcttatgcaaaatagcttatgaaaataaataagcttttatgtattattcataactttgtcaa 948122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 10795032 - 10794963
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtat 154  Q
    ||||||||||||||||| |||||  || |||| |||||||  || || ||||||||||||||| ||||||    
T  10795032 gtccgtttgaattgacttattttagagcttatgcaaaacagcttgtgtaaataaataagtttttatgtat 10794963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 29996751 - 29996678
Alignment:
Q  96 ttgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||||| |||||| || || | ||||||| |||||||||||||||||| ||| || ||| |||||||| |||||    
T  29996751 ttgacttatttttgagtttttgcaaaacaatttatgcaaataaataagcttttatatattattcataagtttgt 29996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 31022371 - 31022432
Alignment:
Q  91 ttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgt 152  Q
    |||||||| || |||||| || |||| |||||||| | ||||||||||||||||||| ||||    
T  31022371 ttgaattgtcttatttttgagcttatgcaaaacatctcatgcaaataaataagtttttatgt 31022432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 8130469 - 8130537
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtca 171  Q
    |||||||||  ||| |||||||  ||||||||||||||||| ||| ||| || |||||||| |||||||    
T  8130469 attttttagcatatgcaaaacagcttatgcaaataaataagcttttatgcattattcataagtttgtca 8130537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 32615535 - 32615455
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||||| ||| ||| ||||| ||| ||||| ||||||  ||||||||||||||||||||| |||||| ||| ||||||||    
T  32615535 ccgtttggattaacttattttatagcttatataaaacagcttatgcaaataaataagtttttatgtattatttataaattt 32615455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 21871193 - 21871269
Alignment:
Q  88 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaat 165  Q
    |||||| ||||||| ||||||||| ||||  |||| | ||||| |||||||||||||||| |||| ||||||||||||    
T  21871193 cgtttggattgacttattttttagcttatgaaaaatagtttatacaaataaataagtttttatgt-tgattcataaat 21871269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 28758426 - 28758366
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||||||  |||||| |||| ||||||||||||||||| |||| |||||| ||||||||    
T  28758426 attttttagtctatacagaacagtttatgcaaataaataaatttttatgtattattcataa 28758366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 4272373 - 4272423
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||||||||| ||||||||||||||||| |||| |||||| || |||||    
T  4272373 ttatacaaaacaatttatgcaaataaataactttttatgtattatacataa 4272423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 22816680 - 22816630
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    ||||| |||||| |||||||||||||||||||||| |||||  ||||||||    
T  22816680 ttataaaaaacaatttatgcaaataaataagtttttatgtaatattcataa 22816630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 21891459 - 21891374
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||| ||||| |||||||| || |||| || || |  ||||||||||||||||||||| || ||| ||||||||  |||||||    
T  21891459 ccgtttggattgattaatttttgagcttatgcagaatagcttatgcaaataaataagttttgatatattattcataagcttgtcaa 21891374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 33321516 - 33321439
Alignment:
Q  95 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||| ||||||||| |||| |||||||  |||||||||||| |||||||| |||||| | ||||||  |||||||    
T  33321516 attgacttattttttagcttatgcaaaacaacttatgcaaataattaagtttttatgtattactcataagcttgtcaa 33321439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 4090454 - 4090539
Alignment:
Q  87 ccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    |||| ||||||| || |||||| || |||| |||||||  ||||||||||||||||  ||| |||||| ||||||||  |||||||    
T  4090454 ccgtctgaattggcttatttttgagcttatgcaaaacagcttatgcaaataaataaactttgatgtattattcataatcttgtcaa 4090539  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 12683696 - 12683651
Alignment:
Q  118 caaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||||    
T  12683696 caaaacagattatgcaaataaataagttttaatgtattattcataa 12683651  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 17797386 - 17797329
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttt 146  Q
    ||||| ||||| | ||||||||  |||| ||||||| |||||||||||||||||||||    
T  17797386 gtttggattgatttattttttaacttatgcaaaacagtttatgcaaataaataagttt 17797329  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 34913485 - 34913429
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||| |||||||  ||||||||||||||||| ||| |||||| |||||||| |||||    
T  34913485 ttatgcaaaacagcttatgcaaataaataagcttttatgtattattcataagtttgt 34913429  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 16225472 - 16225541
Alignment:
Q  85 gtccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtat 154  Q
    ||||||||| ||||||| |||||  || |||| ||||||| |||||| ||||||||||||||| ||||||    
T  16225472 gtccgtttggattgacttattttagagcttatgcaaaacagtttatgtaaataaataagtttttatgtat 16225541  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 26435279 - 26435208
Alignment:
Q  103 attttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    |||||| || ||||||||||||  ||||||||||||||||||||| |||||| |||  ||| |||||||||||    
T  26435279 atttttgagcttatacaaaacagcttatgcaaataaataagtttt-atgtattatttttaagtttgtcaaagt 26435208  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 1265812 - 1265729
Alignment:
Q  89 gtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||||||||| |||||| || |||| |||||||  |||| |||| | ||||| ||| |||||| |||||||| ||||||||    
T  1265812 gtttgaattgacttatttttgagcttatgcaaaacaacttatacaaacagataagattttatgtattattcataattttgtcaa 1265729  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 35897743 - 35897668
Alignment:
Q  88 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataa 163  Q
    |||||| ||||| | |||||| || |||| |||||||  ||||||||||||||||||||| || ||| ||||||||    
T  35897743 cgtttggattgatttatttttaaggttatgcaaaacaacttatgcaaataaataagtttttatttattattcataa 35897668  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 41003392 - 41003439
Alignment:
Q  127 ttatgcaaataaataagttttcatgtatgattcataaatttgtcaaag 174  Q
    ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  41003392 ttatgcaaataaataagtttttatgtattatttataagtttgtcaaag 41003439  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 15631870 - 15631951
Alignment:
Q  88 cgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgt 169  Q
    |||||||||| | | |||||  || ||||||||||||  |||| |||||||||||||||| |||||| ||| |||| |||||    
T  15631870 cgtttgaattaatttattttagagcttatacaaaacaacttatacaaataaataagtttttatgtattatttataagtttgt 15631951  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 35590103 - 35590180
Alignment:
Q  95 attgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaa 172  Q
    ||||||| ||||||||| ||||  ||||||  ||||||||||||||||| ||| ||||||  |||||||  |||||||    
T  35590103 attgacttattttttagcttatgtaaaacaacttatgcaaataaataagcttttatgtatagttcataagcttgtcaa 35590180  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 39941343 - 39941423
Alignment:
Q  90 tttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgtatgattcataaatttgtcaaagt 175  Q
    |||||||||||| |||||| || ||| |||||||||     |||||||||| |||||| |||||| ||||||||  ||||||||||    
T  39941343 tttgaattgacttatttttcagcttaaacaaaacat-----gcaaataaatgagtttttatgtattattcataagcttgtcaaagt 39941423  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 167
Target Start/End: Complemental strand, 38547 - 38493
Alignment:
Q  113 ttatacaaaacattttatgcaaataaataagttttcatgtatgattcataaattt 167  Q
    ||||| |||| | |||||||||||||||||||||| |||||| ||| ||||||||    
T  38547 ttatataaaatagtttatgcaaataaataagtttttatgtattatttataaattt 38493  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 48535 - 48601
Alignment:
Q  86 tccgtttgaattgactaattttttagattatacaaaacattttatgcaaataaataagttttcatgt 152  Q
    |||||||  ||||||| ||||||||| |||||||||| |  ||||||||||||||||| ||| ||||    
T  48535 tccgttttgattgacttattttttagcttatacaaaatagcttatgcaaataaataagcttttatgt 48601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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