View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-10 (Length: 840)
Name: NF1883-Insertion-10
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-10 |
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| [»] scaffold0148 (1 HSPs) |
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| [»] scaffold0280 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 10 - 786
Target Start/End: Complemental strand, 27655 - 26885
Alignment:
| Q |
10 |
tccttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
109 |
Q |
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| T |
27655 |
tccttcaaactgttggatctggacacacagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaa |
27556 |
T |
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| Q |
110 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcnnnnnnnn--atataaaattagaaacaaattcatgattctgaagattc |
207 |
Q |
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| T |
27555 |
ttagacataggtatgcatatgatgattaaattagagacatatttctctcttcttctttttttatataaaattagaaacaaattcatgattctgaaaattc |
27456 |
T |
|
| Q |
208 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
307 |
Q |
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| T |
27455 |
cttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaactgtggagacc |
27356 |
T |
|
| Q |
308 |
tcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcgtgttgatca |
407 |
Q |
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| T |
27355 |
tcgcatacttcaactttagatgcaataccacaacaggccaaggtcaccttagcttcacggccgctaacaacgttagttacagagttattcgtgttgatca |
27256 |
T |
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| Q |
408 |
aagtagaagaaagtttacccttcaaaatcaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
507 |
Q |
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| T |
27255 |
aagtagaagaaagcttacccttcataatgaggattattcctttactagttgtgatgaaggatctaaacggacaggaagtctgaacgtttctttaccgttt |
27156 |
T |
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| Q |
508 |
cgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctgga |
607 |
Q |
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| T |
27155 |
cgcatgaccagtgacaatacgtgctctgaacaacttgaagttagttgggaaccaccttccgaacccatctgtaataactctgttgattgccatggctgga |
27056 |
T |
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| Q |
608 |
aacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaatttgtaccaaaagtaagtattaatattc |
707 |
Q |
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| T |
27055 |
accattctacttgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcgaatctttaaattgtaccaaaagtaagtattaat---- |
26960 |
T |
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| Q |
708 |
tattattcatgtaactaagaatattacaaactcacttaatttgatgaatttggattatagctgaagttgaaaaggtaaa |
786 |
Q |
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| T |
26959 |
----attcatgtaactaagaatattacaaattcacttaatttgatgaatttggattatagctgaagttaaaaaggtaaa |
26885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 126; Significance: 2e-64; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 199 - 671
Target Start/End: Complemental strand, 2307 - 1838
Alignment:
| Q |
199 |
tgaagattccttttattcatttttgtagaaccaactccaagaacttgtgagccctgtggtacaaacacagtcccttatcctctcagtaccggacccaact |
298 |
Q |
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| T |
2307 |
tgaagattccttttattgatatttgcagcaccaactccaagaacttgtgagccttgtggtacaaacacagtcccttatcctctcaataccagacccatct |
2208 |
T |
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| Q |
299 |
gtggagacctcgcatacttcaactttagatgcaatactacaacgggccaaggtcaccttagcttcacggccgccaacaacgttagttacagagtcattcg |
398 |
Q |
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| T |
2207 |
gtgcagacttcacatacttcaactttagatgcaacatctcaacg------ggtaaacttagcttcaccgccaacaacaacgttagttacaaagttattag |
2114 |
T |
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| Q |
399 |
tgttgatcaaagtagaagaaagtttacccttcaaaatcaggattattcctt--tacta-gttgtgatgaaggatctaaacggacaggaagtctgaacgtt |
495 |
Q |
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| T |
2113 |
tgtagacccaagttcaagaacatttaccatttataatgagcataattctttcaaacaatattgtgctgaaggatctaaatagaaaggcaatttgaaggtt |
2014 |
T |
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| Q |
496 |
tctttaccgtttcgcatgaccagtgacgatacgtgctctgaacaacttgtagttagttgggaaccaccttccgaacccatctgtaataactctgttgatt |
595 |
Q |
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| T |
2013 |
ttctcaccgttttactttgccaatgacaatccatgctctgaacaagtggaagttagttgggatccaccttccgaactcgtttgtgataactttgttgatt |
1914 |
T |
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| Q |
596 |
gccatggctggaaacattctacctgtagtaaaggaaagaggtgtctttgcaatgcaaactataactggaatggcga |
671 |
Q |
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| T |
1913 |
tctatggttggaaacattctacctgtagtaaaggaaacaagtgtctttgcaatgcaaagtataaatggagtggcga |
1838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
12 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
111 |
Q |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
112 |
agacataggtatgcatatgatgattaaattaga |
144 |
Q |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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