View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-Insertion-12 (Length: 546)

Name: NF1883-Insertion-12
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-Insertion-12
NF1883-Insertion-12
[»] chr8 (5 HSPs)
chr8 (8-546)||(44729087-44729629)
chr8 (7-303)||(12729398-12729687)
chr8 (141-303)||(28695928-28696092)
chr8 (213-293)||(25953601-25953681)
chr8 (184-274)||(10085641-10085732)
[»] chr3 (8 HSPs)
chr3 (49-306)||(52653826-52654082)
chr3 (49-303)||(33709882-33710133)
chr3 (8-303)||(40574130-40574422)
chr3 (205-283)||(16729894-16729972)
chr3 (213-303)||(49784164-49784255)
chr3 (49-127)||(23686085-23686163)
chr3 (49-127)||(24058322-24058400)
chr3 (213-283)||(29827120-29827190)
[»] chr5 (8 HSPs)
chr5 (69-283)||(9851276-9851488)
chr5 (56-274)||(29006545-29006761)
chr5 (213-293)||(2022641-2022721)
chr5 (148-283)||(36203207-36203342)
chr5 (213-283)||(43378129-43378199)
chr5 (193-241)||(15205528-15205576)
chr5 (205-271)||(9080496-9080562)
chr5 (243-283)||(35369365-35369405)
[»] chr4 (12 HSPs)
chr4 (49-247)||(48779727-48779924)
chr4 (8-161)||(24391843-24391997)
chr4 (213-293)||(3415594-3415674)
chr4 (22-303)||(20251433-20251714)
chr4 (213-282)||(3425142-3425211)
chr4 (213-303)||(18736831-18736921)
chr4 (213-292)||(18670524-18670603)
chr4 (213-293)||(18716168-18716248)
chr4 (218-282)||(30020297-30020361)
chr4 (213-269)||(32429726-32429782)
chr4 (188-274)||(24129169-24129255)
chr4 (86-131)||(47078023-47078068)
[»] chr1 (15 HSPs)
chr1 (8-247)||(49053802-49054043)
chr1 (8-283)||(49061382-49061659)
chr1 (213-293)||(21432107-21432187)
chr1 (213-283)||(44524460-44524530)
chr1 (213-303)||(35624689-35624779)
chr1 (213-277)||(29681289-29681353)
chr1 (213-277)||(48366493-48366557)
chr1 (40-168)||(17458454-17458581)
chr1 (213-283)||(10187018-10187088)
chr1 (53-132)||(42263411-42263490)
chr1 (215-278)||(43358448-43358511)
chr1 (30-110)||(52282015-52282097)
chr1 (64-127)||(31285999-31286062)
chr1 (84-113)||(10917601-10917630)
chr1 (218-303)||(19310521-19310606)
[»] chr7 (9 HSPs)
chr7 (49-280)||(12239457-12239687)
chr7 (188-303)||(37469067-37469182)
chr7 (16-303)||(24870435-24870722)
chr7 (188-285)||(1840839-1840933)
chr7 (213-277)||(5436972-5437036)
chr7 (61-276)||(23757009-23757222)
chr7 (49-113)||(30108187-30108251)
chr7 (56-279)||(20464054-20464275)
chr7 (53-110)||(34091475-34091532)
[»] chr6 (5 HSPs)
chr6 (53-280)||(28611983-28612206)
chr6 (49-233)||(11932007-11932189)
chr6 (212-303)||(24075619-24075710)
chr6 (213-274)||(21937271-21937332)
chr6 (213-283)||(24509270-24509340)
[»] scaffold0007 (1 HSPs)
scaffold0007 (53-277)||(217805-218017)
[»] chr2 (6 HSPs)
chr2 (213-293)||(716045-716123)
chr2 (233-304)||(42779867-42779937)
chr2 (183-247)||(34680975-34681039)
chr2 (54-98)||(34681118-34681162)
chr2 (233-283)||(16272134-16272184)
chr2 (53-109)||(38327394-38327450)


Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 44729087 - 44729629
Alignment:
Q  8 attctttc-tttccctastgcacgagagaaattgataactacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaagg 106  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44729087 attctttcatttccctagtgcacgagagagattgacaactacattctgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtcaagg 44729186  T
Q  107 attccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatccca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44729187 attccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatccca 44729286  T
Q  207 cacacgctttggaatttatgtgcactcttcatcat----gttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaac 302  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  44729287 cacacgctttggaatttatgtgcactcttcatcattcatgttcattttcattatcttcttgatcaagttattgtagcaaactctcaacacagattctaac 44729386  T
Q  303 acatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaacacttccaaccaatctatgaatgttgttacaatctgctccac 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44729387 acatcaacgtgtcgcatgagtattggtgattttgtttcatgattccttccgatcttaactcttccaaccaatctatgaatgttgttacaatctgctccac 44729486  T
Q  403 gtgctttacctccctgcctctgcattcctccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttcaacccctgaattc 502  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729487 gtgctttacctccctgcctctgcattcatccattgttaaaatatctgccatcaagtagccaagggttaacatttgtgtccttatttcaacccctgaattc 44729586  T
Q  503 tgctcttataatatggaccccacagcttttctccctccacataa 546  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  44729587 tgctctta-aatatggaccccacagcttttctccctccacataa 44729629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 12729398 - 12729687
Alignment:
Q  7 aattctttctttcc-ctastgcacgagagaaattgata--actacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtca 103  Q
    |||||||||||| | ||| ||||||||||||||||| |  |||  |||| ||||||||  |||| |||||| ||| ||| ||||||||||||||| ||||    
T  12729398 aattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattg-tcgatatgcttggtgtgaatgtgcaagtcatgtca 12729496  T
Q  104 aggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatc 203  Q
    |||||| ||  ||||||| ||||||| |||||||||| ||||| ||||||||||||||||||||| |    || |||| | || ||||||||||||| ||    
T  12729497 aggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaaggttagtgtgtc 12729596  T
Q  204 ccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |||||||| |||||||||| ||||| ||| ||||||||||||         ||||||||||||||| ||||||||||||  | |||||||| ||||||||    
T  12729597 ccacacactctttggaattcatgtgtacttttcatcatgttc---------atcttcttgatcaaggtattgcagcagatccccaacacaggttctaaca 12729687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 141 - 303
Target Start/End: Complemental strand, 28696092 - 28695928
Alignment:
Q  141 taccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatca 240  Q
    |||||| ||||||| ||||| ||||||| |  | || ||||  ||| |||| |||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  28696092 tacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcatca 28695993  T
Q  241 tgttcattttcattatcttcttgatcaagttattgcagcaga--ctctcaacacagattctaaca 303  Q
    ||||||| ||||| ||||||||| ||||||||||||| || |  | | |||||||||||||||||    
T  28695992 tgttcatattcatcatcttcttggtcaagttattgcaacaaacccccccaacacagattctaaca 28695928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 25953601 - 25953681
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||||||||||||| | ||||||||||| ||||| | |||||||    
T  25953601 ctttgaaatttatgtgcacacttcatcatattcatcttcattatcttcttggttaagttattgcatcagacccccaacaca 25953681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 10085732 - 10085641
Alignment:
Q  184 aacataaaggttagtgtatcccacacacgctttggaatttat--gtgcactcttcatcatgttcattttcattatcttcttgatcaagttatt 274  Q
    ||||||||| ||| ||||||| |||||| ||||| |||||||  |||||||||| |||||||||||  || ||||||| ||| ||||||||||    
T  10085732 aacataaagtttaatgtatcc-acacacactttgaaatttatttgtgcactctttatcatgttcatcatctttatctttttgttcaagttatt 10085641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 49 - 306
Target Start/End: Original strand, 52653826 - 52654082
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctct 148  Q
    ||||||||||||| ||||| ||||||| || | | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||| | |    
T  52653826 attctgtaaactaccattg-tcgatacacttgatgtgaatgtgcaagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattt 52653924  T
Q  149 tgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcatt 248  Q
    |||||||||||||||||||| |  | || ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  52653925 tgcatccggttggcataactggtgagggcgaattgaacctaaaggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcatt 52654024  T
Q  249 ttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaacacat 306  Q
    ||||| |||||||||||||||||||||| ||| || |  ||||||| |||||||||||    
T  52654025 ttcatcatcttcttgatcaagttattgccgcaaaccccaaacacaggttctaacacat 52654082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 49 - 303
Target Start/End: Original strand, 33709882 - 33710133
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtat-taccctc 147  Q
    ||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||| ||||||     
T  33709882 attctgtaaactaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatataccctt 33709980  T
Q  148 ttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    ||||||||||||| ||||||| |    ||||||| || | ||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |    
T  33709981 ttgcatccggttgacataactggtggaggtgaatcgatcctaaaggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttc-t 33710078  T
Q  248 tttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |   || || |||||| ||||| ||||||||||||| | |||||||| ||||||||    
T  33710079 tcatatcattttcttggtcaagatattgcagcagac-cccaacacaggttctaaca 33710133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 40574422 - 40574130
Alignment:
Q  8 attctttctttcc-ctastgcacgagagaaattgata--actacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaa 104  Q
    ||||||||||| | ||| ||||||||||||||||| |  |||  ||||||||||||||||||||| ||||||||  || |||||||||||||||||||||    
T  40574422 attctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtcacgtcaa 40574323  T
Q  105 ggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcc 204  Q
     |||||||  ||||||| ||||  |||||| | || | || | ||||||||  ||  ||| ||| |    |||||||  | | ||||||||||||| |||    
T  40574322 agattccatagtatcctgaaggtaattcgctgata-tgccattttgcatccaattaacattactggtgggggtgaatcaagcttaaaggttagtgtgtcc 40574224  T
Q  205 cacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |||| || |||  |||||||||||||||||   |||||||||||||||| ||||| || ||| ||||||||||| |||  | ||||||||||| |||||    
T  40574223 cacatacacttcagaatttatgtgcactct---tcatgttcattttcatcatcttttttatcgagttattgcagaaga--cccaacacagattgtaaca 40574130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 16729894 - 16729972
Alignment:
Q  205 cacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||||||||||| |||| |||||||| ||| ||||||||||| |||||  |||| |||||||||||||||||||||||    
T  16729894 cacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgatcaagttattgcagcagac 16729972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 49784255 - 49784164
Alignment:
Q  213 ctttggaatttatgtgcactctt-catcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    ||||||||||||||||||| ||| |||||  ||||| ||||| ||||||||  ||||||||||||||||||| | ||||||| |||| ||||    
T  49784255 ctttggaatttatgtgcacactttcatcacattcatgttcatcatcttcttcgtcaagttattgcagcagacccccaacacaaattccaaca 49784164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 23686085 - 23686163
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggg 127  Q
    ||||||||||||| || ||||||||| ||| ||| ||||||| ||| |||||||||| ||| ||  |||||||||||||    
T  23686085 attctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatcctaaaggg 23686163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 24058322 - 24058400
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggg 127  Q
    ||||||||||||| || ||||||||| ||| ||| ||||||| ||| |||||||||| ||| ||  |||||||||||||    
T  24058322 attctgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaagaatttcatcgtatcctaaaggg 24058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 29827190 - 29827120
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||||||||||||| ||  |||||||||  |||| ||||| || |||||| || ||||||||||||||||    
T  29827190 ctttggaatttatgttcaaacttcatcatagtcatcttcatcattttcttggtcgagttattgcagcagac 29827120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 69 - 283
Target Start/End: Complemental strand, 9851488 - 9851276
Alignment:
Q  69 tcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataact 168  Q
    |||||||||| ||| ||||||||||| |||| | ||| ||||||  ||||| | |||||||||||||||||| ||||| |||||| |||||||| |||||    
T  9851488 tcgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtat-acccttttgcattcggttggcttaact 9851390  T
Q  169 cgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaa 268  Q
     | |  || ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||| ||||||||    
T  9851389 ggtag-ggagaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgatcaa 9851291  T
Q  269 gttattgcagcagac 283  Q
    |||||||||||||||    
T  9851290 gttattgcagcagac 9851276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 56 - 274
Target Start/End: Original strand, 29006545 - 29006761
Alignment:
Q  56 aaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatcc 155  Q
    |||||| |||||| ||||||||| ||| |||||||| | |||| ||||||||||||| ||||| || ||| |||||||||  ||| ||||| |||||||     
T  29006545 aaactaacattga-cgatacgcttggtgtgaatgtgtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatct 29006643  T
Q  156 ggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcatta 255  Q
    |||||  | |||| |    || |||| |||| |||| |||||||| || ||||||||||||| ||||||||||||||||||||||| ||||| || || |    
T  29006644 ggttgataaaactagtgg-ggcgaatcgaacctaaaagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatca 29006742  T
Q  256 tcttcttgatcaagttatt 274  Q
    |||| || ||||| |||||    
T  29006743 tcttttttatcaaattatt 29006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 2022721 - 2022641
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    ||||| |||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||    
T  2022721 ctttgaaatttatgtgcacatttcatcatgttcatcttcatcatcttcttgatcaagttattgcagcagacccccaacaca 2022641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 36203207 - 36203342
Alignment:
Q  148 ttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    ||||||||||||||||||||| |    |  |||| |||| |||||||||||||  |||||||||||  || |||||||||||||  ||||| ||||||||    
T  36203207 ttgcatccggttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcat 36203306  T
Q  248 tttcattatcttcttgatcaagttattgcagcagac 283  Q
     ||||| ||||||||||| |||||||| ||||||||    
T  36203307 cttcatcatcttcttgatgaagttattacagcagac 36203342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 43378199 - 43378129
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||| |||||| || |||||||||||||||||||    
T  43378199 ctttgaaatttatgtgcacacttcatcatattcatcttcatcatcttcatggtcaagttattgcagcagac 43378129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 15205528 - 15205576
Alignment:
Q  193 gttagtgtatcccacacacgctttggaatttatgtgcactcttcatcat 241  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  15205528 gttagtgtgtcccacacacgctttgaaatttatgggcactcttcatcat 15205576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 9080562 - 9080496
Alignment:
Q  205 cacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagtt 271  Q
    ||||||| ||||  ||||||||||| || || |||||||||||||||||  |||||||| |||||||    
T  9080562 cacacactctttaaaatttatgtgccctttttatcatgttcattttcatcttcttcttgttcaagtt 9080496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 35369365 - 35369405
Alignment:
Q  243 ttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||| ||||||||||| |||||||| ||||||||||||||    
T  35369365 ttcatcttcattatctttttgatcaaattattgcagcagac 35369405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 49 - 247
Target Start/End: Complemental strand, 48779924 - 48779727
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctct 148  Q
    ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||||||| |||| ||  ||||||| |||||||||| ||| ||| ||||| |    
T  48779924 attctctaaactatcattgattgatatgcttggtgtgaatgtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatat-acccttt 48779826  T
Q  149 tgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    |||||||  ||||||||||| |||  || |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  48779825 tgcatccaattggcataactggcagaggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcat 48779727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 24391843 - 24391997
Alignment:
Q  8 attctttctttcc-ctastgcacgagagaaattga--taactacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaa 104  Q
    ||||||||||| | ||| |||| ||||||||||||  |||||  ||||||||||||||||||| |||||||| | ||| ||| ||||||||||||  |||    
T  24391843 attctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtga-tgtgcaagtcacaccaa 24391940  T
Q  105 ggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttgg 161  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||||||||||    
T  24391941 ggattccattgtatcttgaaggggattcgccggtataacccttttgcatccggttgg 24391997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 3415594 - 3415674
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||| | |||||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacaca 3415674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 20251433 - 20251714
Alignment:
Q  22 tastgcacgagagaaattgata--actacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatc 119  Q
    || ||||||||||||||||| |  |||  ||| ||||||||||||||||||||||| || | | ||||||| |||| ||| |||| ||||| |   ||||    
T  20251433 tagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaaggcacatcaatgattcaatcatatc 20251532  T
Q  120 ctaaagggg-attcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttgg 218  Q
    || |||||| |||| || ||||  |||| ||||||||||||| ||| ||| | |  ||  ||| |||  ||||  ||||||| ||  ||||||||||||     
T  20251533 ctgaagggggattcaccagtatacccct-ttgcatccggttgacattactagtaggggcaaatggaatctaaatattagtgtgtct-acacacgctttga 20251630  T
Q  219 aatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |||||||||| |||||||||||||||||| ||||| ||||||||  ||||  |||| |||||||| | |||||||||||||||||    
T  20251631 aatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaaactattacagcagac-cccaacacagattctaaca 20251714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 3425142 - 3425211
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcaga 282  Q
    ||||||||||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttcatcatcttcttggtcaagttattgcagcaga 3425211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 18736921 - 18736831
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    ||||||||||||||||||| |||||||| |||||| || || |||||||||| ||||||||| |||||||| | ||||||| |||| ||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttgaccaagttattacagcagacccccaacacaaattccaaca 18736831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 18670603 - 18670524
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacac 292  Q
    ||||| ||||||||||||| ||||||||||||||| || || ||||||||| ||||||||||||| ||||| | ||||||    
T  18670603 ctttgaaatttatgtgcacacttcatcatgttcatctttatcatcttcttggtcaagttattgcaacagacgcccaacac 18670524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 18716248 - 18716168
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    ||||||||||||||| ||| |||||||| |||||| || || |||||||||  ||||||||| |||||||| | |||||||    
T  18716248 ctttggaatttatgtacacacttcatcaagttcatcttaatcatcttcttggccaagttattacagcagacccccaacaca 18716168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 282
Target Start/End: Original strand, 30020297 - 30020361
Alignment:
Q  218 gaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcaga 282  Q
    |||||||| ||||| |||||||||  |||| ||||| ||||||||| ||||||||||||||||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttggtcaagttattgcagcaga 30020361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 32429726 - 32429782
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaag 269  Q
    |||| |||||||||||||| ||||||||||||||| ||||| ||| |||||||||||    
T  32429726 ctttagaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgatcaag 32429782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 24129255 - 24129169
Alignment:
Q  188 taaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttatt 274  Q
    ||||| ||| ||| |||| |||| ||||||||||||||||||||| |||||||| |||||  ||||   |||||||||||| |||||    
T  24129255 taaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcatattcatcatcatcgccttcttgatcaaattatt 24129169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 47078068 - 47078023
Alignment:
Q  86 aatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggatt 131  Q
    |||||| ||||||||||||||||||||  |||||||||||||||||    
T  47078068 aatgtgtaagtcacgtcaaggattccatggtatcctaaaggggatt 47078023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 49053802 - 49054043
Alignment:
Q  8 attctttct-ttccctastgcacgagagaaattg--ataactacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaa 104  Q
    ||||||||| ||| ||| |||||||| |||||||  | ||||  ||| ||||||||| ||||| |||||| ||| ||| |||||||||||||||||||||    
T  49053802 attctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattg-tcgatatgcttggtgtgaatgtgcaagtcacgtcaa 49053900  T
Q  105 ggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcc 204  Q
    ||||| || |||||||| |||||||||||||||||| ||||| |||||||| ||||| |||||| |    || |||| |||| ||||||||||||| |||    
T  49053901 ggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaaggttagtgtttcc 49054000  T
Q  205 cacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    ||||||||| |||||||||||||| || |||||||||||||||    
T  49054001 cacacacgcattggaatttatgtgtacacttcatcatgttcat 49054043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 49061382 - 49061659
Alignment:
Q  8 attctttctttcc-ctastgcacgagagaaattgataa--ctacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaa 104  Q
    ||||||||||| | ||| |||||||| |||||||| ||  ||  ||||||||||||| ||||| |||||| | | ||| ||||||||||| |||||||||    
T  49061382 attctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattg-tcgatatgtttggtgtgaatgtgcaaatcacgtcaa 49061480  T
Q  105 ggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcc 204  Q
    |||||||| ||||| || ||||||||||| |||||| ||||| |||||||  |||||||||||| |    || |||| |||| |||||  |||||| |||    
T  49061481 ggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaagactagtgtttcc 49061580  T
Q  205 cacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    |||||||||||| |||||||||||||| ||||||||||||||| ||| | ||||| ||| | || ||||||||||||||    
T  49061581 cacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctttttggtaaaattattgcagcagac 49061659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 293
Target Start/End: Original strand, 21432107 - 21432187
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    ||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||||||||| | |||||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttggtcaagttattgcagcagacccccaacaca 21432187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 44524460 - 44524530
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgatcaagttattgcaacagac 44524530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 35624779 - 35624689
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    ||||||||||||||||||| |||| | || ||||| ||||| ||||||||| ||||||||||||||||||| | |||||||  ||||||||    
T  35624779 ctttggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttggtcaagttattgcagcagacccccaacacaagttctaaca 35624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 29681353 - 29681289
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgca 277  Q
    ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| |||||||||||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 29681289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 48366493 - 48366557
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgca 277  Q
    |||| |||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  48366493 ctttcgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgatcaagttattgca 48366557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 17458454 - 17458581
Alignment:
Q  40 gataactacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggta 139  Q
    |||||||  ||| |||||||||||||||||||||||||| ||| ||||  ||||| |||| || | |||| |||  |||| | || |||||||| |||||    
T  17458454 gataactttattttgtaaactatcattgatcgatacgcttggtttgaacatgcaaatcacatcgaagatttcaaaatatcttcaaagggattcgtcggta 17458553  T
Q  140 ttaccctcttgcatccggttggcataact 168  Q
     |||||| |||||||||| ||||||||||    
T  17458554 -tacccttttgcatccggctggcataact 17458581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 10187018 - 10187088
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||| ||||||||||||| |||||||||  |||| || || ||||||||||||||||||||| |||||||    
T  10187018 ctttgtaatttatgtgcacgcttcatcatagtcatatttatcatcttcttgatcaagttattgtagcagac 10187088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 42263490 - 42263411
Alignment:
Q  53 tgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattc 132  Q
    |||||| || ||||| ||||||||||  |||||||||||||||||| ||||| ||||  || ||||||| ||||||||||    
T  42263490 tgtaaattaacattgttcgatacgcttagtatgaatgtgcaagtcatgtcaaagattttaaagtatcctgaaggggattc 42263411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 43358511 - 43358448
Alignment:
Q  215 ttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcag 278  Q
    |||||||| |||||||| |||||||||  |||| ||||| |||||||||||||| |||||||||    
T  43358511 ttggaattcatgtgcacgcttcatcatagtcatcttcatcatcttcttgatcaatttattgcag 43358448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 52282097 - 52282015
Alignment:
Q  30 gagagaaattga--taactacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattc 110  Q
    ||||||||||||  |||||  ||||||||||||| ||||||||||| |||| ||| ||||| ||||||||| ||||| |||||    
T  52282097 gagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtgaatatgcaagtcatgtcaaagattc 52282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 31285999 - 31286062
Alignment:
Q  64 attgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggg 127  Q
    ||||||||||| ||| | ||||||||| ||||||||| ||| |||||||| ||||||| |||||    
T  31285999 attgatcgataagcttgatatgaatgttcaagtcacggcaatgattccaaagtatcctgaaggg 31286062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 10917601 - 10917630
Alignment:
Q  84 tgaatgtgcaagtcacgtcaaggattccaa 113  Q
    ||||||||||||||||||||||||||||||    
T  10917601 tgaatgtgcaagtcacgtcaaggattccaa 10917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 303
Target Start/End: Complemental strand, 19310606 - 19310521
Alignment:
Q  218 gaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |||||||||||||| ||||||||| | ||| || || ||||||||  | ||||||||| |||||||  ||||||||  ||||||||    
T  19310606 gaatttatgtgcacacttcatcatatacatctttatcatcttcttagttaagttattgtagcagaccttcaacacaagttctaaca 19310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 49 - 280
Target Start/End: Complemental strand, 12239687 - 12239457
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctct 148  Q
    |||||| |||||| ||||| |||||||||| ||| |||||||||||||||||||||||||| ||  ||||||| ||||||||||||||  || ||||| |    
T  12239687 attctggaaactaccattg-tcgatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacat-acccttt 12239590  T
Q  149 tgcatccggttgg-cataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    ||||||||||| | ||||||| |    || |||| |||| ||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||| |||||    
T  12239589 tgcatccggtttgacataactggtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcat 12239490  T
Q  248 tttcattatcttcttgatcaagttattgcagca 280  Q
      |||| |||||||| |||||||||||||||||    
T  12239489 catcatcatcttcttaatcaagttattgcagca 12239457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 37469067 - 37469182
Alignment:
Q  188 taaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctc 287  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||  || ||||||||||| ||||| |||||||||||||||||||||| ||| || | |    
T  37469067 taaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagttattgctgcaaaccccc 37469166  T
Q  288 aacacagattctaaca 303  Q
    ||||||| ||||||||    
T  37469167 aacacaggttctaaca 37469182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 24870435 - 24870722
Alignment:
Q  16 tttccctastgcacgagagaaattgata--actacattctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaa 113  Q
    |||| ||| ||||||||| |||||||||  |||  ||| |||||||||||||||||| ||||||| ||| | ||| || |||| |||||||  ||  ||     
T  24870435 tttctctagtgcacgagaaaaattgatagaactttattatgtaaactatcattgatcaatacgcttggtgtaaatatgaaagtaacgtcaataatatcat 24870534  T
Q  114 tgtatcctaaaggggattcgccggtattaccctcttgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgc 213  Q
     ||||||||| | ||||| |||     |||||| ||||||||||||||||||||| | |  || |||| |||| ||||||||||  | ||||| ||| |     
T  24870535 agtatcctaatgtggatttgccaca--tacccttttgcatccggttggcataactggtaggggcgaatcgaacttaaaggttagcatgtcccatacaaga 24870632  T
Q  214 tttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    | ||||||||||||| | | ||||||||||  || ||||| |||||||| ||||||||||||||||| || | ||||| || ||||||||    
T  24870633 tgtggaatttatgtgtattattcatcatgtctatcttcatcatcttcttcatcaagttattgcagcaaacccccaacataggttctaaca 24870722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 1840839 - 1840933
Alignment:
Q  188 taaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactc 285  Q
    ||||||||||||||| |||||||| |||| || ||||||| |||| |||||||||||||   |||| |||| ||||||||||||||||||||||||||    
T  1840839 taaaggttagtgtattccacacacactttagattttatgtccacttttcatcatgttca---tcatcatctacttgatcaagttattgcagcagactc 1840933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 5436972 - 5437036
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgca 277  Q
    ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| |||||||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttggtcaagttattgca 5437036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 61 - 276
Target Start/End: Complemental strand, 23757222 - 23757009
Alignment:
Q  61 atcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatccggttg 160  Q
    ||||||||| |||||| | ||| |||||||| | |||||||||||| | |||   |||| | ||||||||||||| |||| ||||| ||||||| ||||     
T  23757222 atcattgattgatacgtttggtgtgaatgtgaatgtcacgtcaagggtcccatattatcttgaaggggattcgccagtat-acccttttgcatctggtta 23757124  T
Q  161 gcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcattatcttc 260  Q
    || ||| | | |  ||||||| |||| |||| |||||| | || |||| |  ||| ||||||||||| ||||||||||||||||||| ||||| || |||    
T  23757123 gcttaattggtag-ggtgaatcgaacctaaaagttagtatgtcacacataaacttcggaatttatgttcactcttcatcatgttcatcttcatcattttc 23757025  T
Q  261 ttgatcaagttattgc 276  Q
    ||  ||||||| ||||    
T  23757024 ttagtcaagttcttgc 23757009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 30108251 - 30108187
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaa 113  Q
    ||||| ||||||||| |||||||||| | |  |||||||||||||| |||| |||||||||||||    
T  30108251 attctataaactatctttgatcgataagatttgtatgaatgtgcaaatcacctcaaggattccaa 30108187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 279
Target Start/End: Original strand, 20464054 - 20464275
Alignment:
Q  56 aaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgcatcc 155  Q
    |||| |||||||||||||| ||| ||| |||||||||||||| ||| |||||||  ||  |||  | || | |||| ||||||| |||| | || |||||    
T  20464054 aaacaatcattgatcgatatgcttggtgtgaatgtgcaagtctcgttaaggattttaaaatattttgaaagagatttgccggta-taccatttttcatcc 20464152  T
Q  156 ggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttcatta 255  Q
    | ||| ||||||| |    |  |||| |||| ||||  ||||| ||||| |||| ||||||||||||||| |||| ||||||||| ||| ||||| || |    
T  20464153 gattgacataactagtggggacgaatcgaacctaaaaattagtatatcctacacgcgctttggaatttatatgcattcttcatcaagtt-atttttatca 20464251  T
Q  256 tcttcttgatcaagttattgcagc 279  Q
    ||| ||| |||  |||||||||||    
T  20464252 tctccttaatctggttattgcagc 20464275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 34091532 - 34091475
Alignment:
Q  53 tgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattc 110  Q
    ||||||||| |||| ||  ||||| | ||| |||||||||||||||||||||||||||    
T  34091532 tgtaaactaccattaattcatacgattggtgtgaatgtgcaagtcacgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 53 - 280
Target Start/End: Complemental strand, 28612206 - 28611983
Alignment:
Q  53 tgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgca 152  Q
    |||| |||| |||||| ||||| ||| ||| ||||||| ||||||||||||||||||||| ||||| || |||||||||||||| ||| ||| | || ||    
T  28612206 tgtatactaccattgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgtattctgaaggggattcgccgatat-accattttaca 28612108  T
Q  153 tccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttca 252  Q
    | | |||| ||||||| |    |   ||| |||| ||||||||| ||| | ||||||||  |||  ||||||||||||| ||||||||||||||| ||||    
T  28612107 tactgttgacataactggtggggaaaaatcgaacctaaaggtta-tgtgttccacacac--tttaaaatttatgtgcacacttcatcatgttcatattca 28612011  T
Q  253 ttatcttcttgatcaagttattgcagca 280  Q
    | ||||||||||||||||||||||||||    
T  28612010 tcatcttcttgatcaagttattgcagca 28611983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 233
Target Start/End: Original strand, 11932007 - 11932189
Alignment:
Q  49 attctgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctct 148  Q
    ||||| ||||||| ||||| ||||||  || ||| |||||  ||||||||| ||||||||| ||  ||||||| |||||| ||||| ||||| ||||| |    
T  11932007 attctataaactaccattg-tcgataaacttggtgtgaataagcaagtcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttt 11932104  T
Q  149 tgcatccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactc 233  Q
    |||||||||||||||||||| |    || ||||  ||| ||||||||||||| ||| ||||| |||||| |||||||||||||||    
T  11932105 tgcatccggttggcataactagtgggggcgaatcaaacctaaaggttagtgtgtccaacacatgctttgaaatttatgtgcactc 11932189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 24075710 - 24075619
Alignment:
Q  212 gctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaaca 303  Q
    |||||||||||||| ||||| |||  |||| ||||| || || |||||||| |||||||||||||||||||| |  ||||||| ||||||||    
T  24075710 gctttggaatttatatgcacactttgtcatattcatctttatcatcttcttaatcaagttattgcagcagacccctaacacaggttctaaca 24075619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 21937332 - 21937271
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttatt 274  Q
    ||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||| ||||||||||    
T  21937332 ctttgtaatttatgtgcacacttcatcatattcatcttcatcatcttcttggtcaagttatt 21937271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 24509270 - 24509340
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||| ||||||| ||||  |||||||||  |||| ||||| ||||||||| ||||||| |||||||||||    
T  24509270 ctttgaaatttatttgcaaacttcatcatactcatcttcatcatcttcttggtcaagtttttgcagcagac 24509340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 277
Target Start/End: Original strand, 217805 - 218017
Alignment:
Q  53 tgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgca 152  Q
    ||||||||| ||||||||||||| || ||| |||||||||||||| | ||||||||| ||  ||||         ||||||||||||| ||||| ||| |    
T  217805 tgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtctcttcaaggatttcatcgtatt--------gattcgccggtat-acccttttgta 217895  T
Q  153 tccggttggcataactcgcaatggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcattttca 252  Q
    || |||||||||| || |    || |||| || | ||||||| ||| | ||||||||||  ||||||||||||||||||| ||||| |||||||| ||||    
T  217896 tcaggttggcatagctggtgggggagaatcgatcctaaaggt-agtttgtcccacacac--tttggaatttatgtgcactattcattatgttcatcttca 217992  T
Q  253 ttatcttcttgatcaagttattgca 277  Q
    | ||||| ||  |||||||||||||    
T  217993 tcatcttttttgtcaagttattgca 218017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 716123 - 716045
Alignment:
Q  213 ctttggaatttatgtgcactcttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacaca 293  Q
    |||| ||||||||||| || ||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| |||||||||    
T  716123 ctttagaatttatgtgtacgcttcatcatattcattt-catcatcttcttggtcaagttattgcagcagac-ctcaacaca 716045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 42779937 - 42779867
Alignment:
Q  233 cttcatcatgttcattttcattatcttcttgatcaagttattgcagcagactctcaacacagattctaacac 304  Q
    |||||| |||||||| ||||| ||||||||| ||||||||||||||||||| | ||||||| |||| |||||    
T  42779937 cttcattatgttcatcttcatcatcttcttggtcaagttattgcagcagac-cccaacacaaattccaacac 42779867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 34681039 - 34680975
Alignment:
Q  183 gaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcatgttcat 247  Q
    |||| |||| ||||||||| |||||||| |||||  |||| ||||||| ||||||||||||||||    
T  34681039 gaacctaaaagttagtgtaccccacacatgcttttaaattcatgtgcagtcttcatcatgttcat 34680975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 34681162 - 34681118
Alignment:
Q  54 gtaaactatcattgatcgatacgctaggtatgaatgtgcaagtca 98  Q
    ||||||||||||||||||||||||| | | |||||||||||||||    
T  34681162 gtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca 34681118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 16272184 - 16272134
Alignment:
Q  233 cttcatcatgttcattttcattatcttcttgatcaagttattgcagcagac 283  Q
    ||||||||||||||| || || ||||||||  |||||||||||||||||||    
T  16272184 cttcatcatgttcatctttatcatcttcttagtcaagttattgcagcagac 16272134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 38327450 - 38327394
Alignment:
Q  53 tgtaaactatcattgatcgatacgctaggtatgaatgtgcaagtcacgtcaaggatt 109  Q
    |||||| || ||||||||||| || | ||| |||||||| |||||||||||||||||    
T  38327450 tgtaaattaccattgatcgatgcgtttggtgtgaatgtgtaagtcacgtcaaggatt 38327394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University