View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1883-Insertion-15 (Length: 88)
Name: NF1883-Insertion-15
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1883-Insertion-15 |
| |
|
Alignment Details
Target: chr5 (Bit Score: 81; Significance: 9e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 9e-39
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 37188781 - 37188861
Alignment:
Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacaaaatatagttccaacaccaaccaaaccaa |
87 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
37188781 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacaaaatatagttccaacaccaaccaaaccaa |
37188861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 37893683 - 37893763
Alignment:
Q |
7 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcaaccaacaaaatatagttccaacaccaaccaaaccaa |
87 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
37893683 |
aatttgaagctggaatcttatatattaagcttccaaaactcatcagccaacaaaatatagttccaacaccaaccaaaccaa |
37893763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3179 times since January 2019
Visitors: 8725