View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-16 (Length: 478)
Name: NF1883-Insertion-16
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 478
Target Start/End: Complemental strand, 28776094 - 28775624
Alignment:
| Q |
8 |
gttgcgggaggaagtttcttcaaatcatcctcttcctcatcctctaaatcattcacaacttattcaaattctccaattgttcaggtgcgacatcataacc |
107 |
Q |
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| T |
28776094 |
gttgcgggaggaagtttcttcaaatcatcctcttcctcatcctctaaatcattcacaacttattcaaattctccaagtgttcgggtgcaacatcataccc |
28775995 |
T |
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| Q |
108 |
gttctcatcatgctcgtcctaagtccacaaatggtgaaggagtgtctgcgtttttgttaatggttggcataatggttgtcatttatgttgtatgtcgttg |
207 |
Q |
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| T |
28775994 |
gttctcatcatgctcgtcctaagtctacaaatggtgaaggagggtctgcgtttttgttaatggttggcataatggttgtcatttatgttgtatgtcgttg |
28775895 |
T |
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| Q |
208 |
tacagaaaacaatgatactccagctactgtactcaagcttcaggtttgttaacaaaaacatctattcttgtctgtgcaatgacagagtgtactgtaatat |
307 |
Q |
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| T |
28775894 |
tacagaaaacaatgatactccagttactgtactcaagcttcaggtttgttaacaaaaacatctattcttgtctgtgcaatgacagtgtgtactgtaatat |
28775795 |
T |
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| Q |
308 |
ctctaagacattgtaaatgtttttgtgtctgttgtttaaggttggaatgttggatgagatgggatgcacattacaaagggatctagctaggattgcagaa |
407 |
Q |
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| T |
28775794 |
ctctaagacattgtaaatgtttttgtgtctgttgtttaaggttggaatgttggatgagatgggatgcacattacaaagggatctagctaggattgcagaa |
28775695 |
T |
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| Q |
408 |
gctgctaatacatcctccaaggaaggtgtgcgctgtttattgaaaggtgagtgagttgcttttgcttctaa |
478 |
Q |
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| T |
28775694 |
gctgctaatacatcctccaaggaaggtgtgcgctgtttattgaaaggtgagtgagttgcttttgcttctaa |
28775624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 319 - 459
Target Start/End: Complemental strand, 28767895 - 28767755
Alignment:
| Q |
319 |
tgtaaatgtttttgtgtctgttgtttaaggttggaatgttggatgagatgggatgcacattacaaagggatctagctaggattgcagaagctgctaatac |
418 |
Q |
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||||||||||||| | ||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28767895 |
tgtaaatgtttttattcctgttgtttaaggttggaatgttggttgaggtgggaaacacaatacaaagggatctagctaggattgcagaagctgctaatac |
28767796 |
T |
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| Q |
419 |
atcctccaaggaaggtgtgcgctgtttattgaaaggtgagt |
459 |
Q |
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| T |
28767795 |
atcctctcgagaaggtgtctgcaatttattgaaaggtgagt |
28767755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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