View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-17 (Length: 463)
Name: NF1883-Insertion-17
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 36330729 - 36331193
Alignment:
| Q |
8 |
ccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaat------aga |
101 |
Q |
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| T |
36330729 |
ccctcagcatttgcatccctctttgttccaatgtaacaatcatcgtcattctcgaactcattatcagattgtacattctcatcctaaaaatagaaataga |
36330828 |
T |
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| Q |
102 |
aatagaagggatgagttgcctgaaacatgaataattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaacg |
201 |
Q |
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| T |
36330829 |
aatagaagggatgagttgcctgaaacatgaagaattatattggcttatttgactttatcgtagtttatacatatgatcgattaatgataattacttaagg |
36330928 |
T |
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| Q |
202 |
aaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgacaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttc |
301 |
Q |
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| T |
36330929 |
aaactatttctatccaaacagagcgttaaaaggaaaagctaccttgaaatgagaaggaatgcgatcctttacggaaacagggtcgtagcgcttattcttc |
36331028 |
T |
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| Q |
302 |
atagactcttcctctgcatcttgttcctcgtattcata---aacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatg |
398 |
Q |
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| T |
36331029 |
atagactcttcctctgcatcttgttcctcgtattcataaacaacatcagtggtggcttcatcgaaatggacattggtttgaatctgtttgttcaaagatg |
36331128 |
T |
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| Q |
399 |
aaggcaaacgaggattggttttcgactttttacttcggaggttggtgccgttcatctgttttcgt |
463 |
Q |
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| T |
36331129 |
aaggcgaacgaggattggttttcgactttttacttcggaggttggtgtcgttcatctgttttcgt |
36331193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 44371826 - 44371862
Alignment:
| Q |
376 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
412 |
Q |
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| T |
44371826 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44371862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 44380681 - 44380717
Alignment:
| Q |
376 |
ttgaatctgtttgttcaaagatgaaggcaaacgagga |
412 |
Q |
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| T |
44380681 |
ttgaatctcttttttcaaagatgaaggcaaacgagga |
44380717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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