View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-18 (Length: 448)
Name: NF1883-Insertion-18
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 214 - 448
Target Start/End: Complemental strand, 30001937 - 30001705
Alignment:
| Q |
214 |
tatataaaaaggatttaagcagagagggttcaagtacttctccaaagaacactgcatcctttttcttctagacacattaaatagtggnnnnnnnatagtg |
313 |
Q |
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| T |
30001937 |
tatataaaaaggatttaa--agagagggttcgagtacctctccaaagaacactgcatcctttttattctagacacattaaatagtggttttattatggtg |
30001840 |
T |
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| Q |
314 |
tctcaaacccacatatttaagtgacatcatgaatatacaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctctcaacattac |
413 |
Q |
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| T |
30001839 |
tctcaaacccacatatttaaatgacatcatgaatatgcaatagtcaatttgggggttaaaaggatggtagaccttgccggagattttctttcaacattac |
30001740 |
T |
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| Q |
414 |
ctcatgttccacatttacaagccaccttgtttttg |
448 |
Q |
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| T |
30001739 |
ctcatgatccacatttacaagccaccttgtttttg |
30001705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 30002935 - 30002850
Alignment:
| Q |
6 |
cactgccttctttgaatggtcagcatttttctttagcaatttaaccacaaaaattaaaatagtttttataatttaaaagtaaaatg |
91 |
Q |
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| T |
30002935 |
cactgccttctttgaatggtcagcatttttctttagcaatttaaccacaaaaagtaaaatcgtttctataatttaaaaataaaatg |
30002850 |
T |
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