View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-Insertion-2 (Length: 556)

Name: NF1883-Insertion-2
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-Insertion-2
NF1883-Insertion-2
[»] chr2 (25 HSPs)
chr2 (112-530)||(12438500-12438919)
chr2 (1-67)||(12438951-12439017)
chr2 (206-307)||(27665118-27665220)
chr2 (206-307)||(12016668-12016770)
chr2 (206-307)||(16126633-16126735)
chr2 (201-307)||(10690779-10690886)
chr2 (206-304)||(19228427-19228526)
chr2 (206-307)||(14377426-14377528)
chr2 (222-307)||(22162151-22162237)
chr2 (206-307)||(22705456-22705558)
chr2 (206-307)||(39904122-39904224)
chr2 (251-307)||(4821323-4821380)
chr2 (206-307)||(26229928-26230029)
chr2 (201-307)||(16919228-16919335)
chr2 (192-290)||(23932552-23932651)
chr2 (206-269)||(4579902-4579965)
chr2 (206-304)||(5583635-5583734)
chr2 (206-307)||(15411696-15411799)
chr2 (242-304)||(34817581-34817644)
chr2 (201-290)||(7720111-7720201)
chr2 (251-307)||(8770960-8771017)
chr2 (206-282)||(34214051-34214128)
chr2 (214-290)||(45062207-45062284)
chr2 (217-307)||(2051626-2051718)
chr2 (241-307)||(2060116-2060184)
[»] chr7 (24 HSPs)
chr7 (206-307)||(19889342-19889444)
chr7 (207-307)||(7170005-7170106)
chr7 (212-307)||(5909356-5909452)
chr7 (206-309)||(24250315-24250419)
chr7 (206-307)||(23982829-23982932)
chr7 (206-290)||(42750290-42750374)
chr7 (206-307)||(19868115-19868218)
chr7 (206-307)||(12086005-12086107)
chr7 (206-307)||(39757184-39757286)
chr7 (203-307)||(3561952-3562057)
chr7 (205-307)||(36548534-36548637)
chr7 (242-307)||(39869160-39869227)
chr7 (242-307)||(384504-384570)
chr7 (206-307)||(9331963-9332065)
chr7 (206-307)||(24463029-24463131)
chr7 (215-290)||(12650831-12650907)
chr7 (206-304)||(33342990-33343089)
chr7 (206-307)||(47120268-47120370)
chr7 (221-307)||(24699152-24699239)
chr7 (213-307)||(38554246-38554342)
chr7 (203-290)||(47457553-47457641)
chr7 (206-304)||(46290012-46290111)
chr7 (3-45)||(33245646-33245688)
chr7 (494-530)||(30604280-30604316)
[»] chr3 (25 HSPs)
chr3 (206-307)||(11610916-11611018)
chr3 (206-307)||(51339258-51339360)
chr3 (207-290)||(37444149-37444232)
chr3 (206-290)||(37055458-37055543)
chr3 (206-307)||(3863331-3863433)
chr3 (206-307)||(20938058-20938160)
chr3 (203-307)||(54621292-54621397)
chr3 (201-304)||(2571265-2571369)
chr3 (206-289)||(30214103-30214186)
chr3 (232-307)||(40497075-40497151)
chr3 (240-307)||(38786398-38786465)
chr3 (240-290)||(40330382-40330432)
chr3 (251-307)||(29686367-29686424)
chr3 (212-307)||(32553374-32553470)
chr3 (206-304)||(10307768-10307867)
chr3 (206-304)||(12515551-12515650)
chr3 (242-307)||(13495331-13495398)
chr3 (212-290)||(24569329-24569408)
chr3 (242-307)||(16875099-16875165)
chr3 (242-307)||(50364228-50364294)
chr3 (214-290)||(2379164-2379238)
chr3 (246-290)||(53537083-53537128)
chr3 (272-307)||(26486451-26486487)
chr3 (206-305)||(32321800-32321898)
chr3 (206-304)||(51618051-51618148)
[»] chr1 (24 HSPs)
chr1 (206-307)||(39150401-39150503)
chr1 (207-307)||(6754474-6754575)
chr1 (205-307)||(8062205-8062308)
chr1 (206-307)||(17919455-17919557)
chr1 (207-307)||(41624832-41624933)
chr1 (206-290)||(23378597-23378681)
chr1 (206-307)||(313751-313853)
chr1 (243-307)||(30363069-30363135)
chr1 (206-307)||(44918026-44918128)
chr1 (206-282)||(51382373-51382450)
chr1 (206-304)||(3121120-3121219)
chr1 (254-307)||(6570059-6570113)
chr1 (242-307)||(39930875-39930941)
chr1 (251-307)||(30288938-30288995)
chr1 (206-304)||(1502797-1502896)
chr1 (219-286)||(32801102-32801169)
chr1 (206-269)||(39627685-39627748)
chr1 (252-307)||(9516628-9516685)
chr1 (206-290)||(6520713-6520797)
chr1 (201-304)||(23576491-23576595)
chr1 (206-304)||(23591699-23591799)
chr1 (204-307)||(32716237-32716341)
chr1 (271-307)||(43671757-43671793)
chr1 (252-307)||(52833546-52833602)
[»] chr6 (17 HSPs)
chr6 (203-307)||(2830755-2830860)
chr6 (206-307)||(5362967-5363069)
chr6 (242-307)||(1017852-1017919)
chr6 (242-307)||(22974647-22974713)
chr6 (242-307)||(23813688-23813754)
chr6 (206-305)||(6016857-6016958)
chr6 (251-307)||(17596388-17596445)
chr6 (200-304)||(28943846-28943951)
chr6 (206-304)||(14228203-14228302)
chr6 (206-304)||(17552664-17552763)
chr6 (206-292)||(26602520-26602607)
chr6 (206-304)||(33017726-33017825)
chr6 (207-261)||(17596315-17596369)
chr6 (243-307)||(31169837-31169903)
chr6 (206-305)||(18332764-18332865)
chr6 (206-290)||(29863394-29863479)
chr6 (206-290)||(30623327-30623412)
[»] chr5 (20 HSPs)
chr5 (207-307)||(8103654-8103755)
chr5 (203-307)||(9184206-9184311)
chr5 (212-307)||(4047420-4047516)
chr5 (216-307)||(28629890-28629982)
chr5 (206-304)||(2795525-2795624)
chr5 (206-307)||(30328401-30328503)
chr5 (241-307)||(11375996-11376063)
chr5 (206-307)||(11636733-11636836)
chr5 (201-307)||(15190869-15190976)
chr5 (242-307)||(16174695-16174762)
chr5 (252-303)||(29538775-29538827)
chr5 (206-307)||(5958197-5958300)
chr5 (242-307)||(15241024-15241091)
chr5 (206-304)||(30839783-30839882)
chr5 (197-307)||(34578004-34578115)
chr5 (206-304)||(36597581-36597680)
chr5 (242-304)||(6863594-6863657)
chr5 (206-280)||(12642094-12642169)
chr5 (213-269)||(315350-315407)
chr5 (206-283)||(40512953-40513030)
[»] chr8 (31 HSPs)
chr8 (201-307)||(7140533-7140640)
chr8 (206-307)||(10129105-10129207)
chr8 (206-307)||(13328015-13328117)
chr8 (232-306)||(45516316-45516390)
chr8 (206-307)||(9743863-9743965)
chr8 (206-307)||(40210895-40210997)
chr8 (203-307)||(39701877-39701982)
chr8 (232-307)||(8140595-8140671)
chr8 (206-307)||(26682069-26682172)
chr8 (206-307)||(35678348-35678451)
chr8 (206-283)||(3306154-3306231)
chr8 (206-307)||(38527822-38527928)
chr8 (240-307)||(34741739-34741807)
chr8 (245-307)||(9801709-9801772)
chr8 (206-307)||(14816199-14816302)
chr8 (206-307)||(14829438-14829541)
chr8 (241-307)||(39024931-39024998)
chr8 (206-303)||(2161389-2161487)
chr8 (206-290)||(6818018-6818103)
chr8 (214-305)||(19343913-19344005)
chr8 (3-45)||(277714-277756)
chr8 (3-45)||(823899-823941)
chr8 (200-307)||(4080467-4080576)
chr8 (200-307)||(4084616-4084725)
chr8 (200-307)||(4102923-4103032)
chr8 (207-307)||(15868035-15868135)
chr8 (263-304)||(35583426-35583467)
chr8 (242-290)||(38048029-38048078)
chr8 (202-266)||(11947016-11947080)
chr8 (200-290)||(13496823-13496915)
chr8 (240-307)||(44091354-44091422)
[»] scaffold0011 (1 HSPs)
scaffold0011 (206-307)||(13087-13189)
[»] scaffold0727 (1 HSPs)
scaffold0727 (205-307)||(5691-5795)
[»] chr4 (21 HSPs)
chr4 (205-307)||(23553570-23553674)
chr4 (206-307)||(7349690-7349792)
chr4 (206-307)||(16667458-16667561)
chr4 (241-307)||(41415631-41415698)
chr4 (206-288)||(49228358-49228441)
chr4 (201-283)||(10658543-10658625)
chr4 (201-283)||(10872688-10872770)
chr4 (242-307)||(36000014-36000080)
chr4 (206-304)||(9759219-9759318)
chr4 (206-304)||(50352304-50352403)
chr4 (221-289)||(10813587-10813656)
chr4 (216-288)||(29190909-29190982)
chr4 (200-305)||(39539459-39539566)
chr4 (206-304)||(40049560-40049659)
chr4 (206-307)||(10389342-10389444)
chr4 (201-305)||(17409820-17409926)
chr4 (221-283)||(39876847-39876909)
chr4 (206-307)||(25843292-25843396)
chr4 (216-269)||(40681960-40682013)
chr4 (206-305)||(47326968-47327069)
chr4 (206-305)||(47341764-47341865)
[»] scaffold0061 (1 HSPs)
scaffold0061 (206-304)||(52856-52955)
[»] scaffold0017 (1 HSPs)
scaffold0017 (206-304)||(145679-145778)
[»] scaffold0036 (1 HSPs)
scaffold0036 (202-304)||(94095-94199)
[»] scaffold0009 (2 HSPs)
scaffold0009 (245-307)||(43503-43566)
scaffold0009 (241-307)||(191388-191455)
[»] scaffold0618 (1 HSPs)
scaffold0618 (240-307)||(8488-8556)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 112 - 530
Target Start/End: Complemental strand, 12438919 - 12438500
Alignment:
Q  112 ttgttgacaagatggataagaaaagaagggtctcttcaatccacacactannnnnnnnnnnnnnn-aaggaatccacacactattataatttggatttgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||| |||||    
T  12438919 ttgttgacaagatggataagaaaagaagggtctcttcaatccacacactattttttttttttttttaaggaatccacacactattataatttgggtttgt 12438820  T
Q  211 ataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaactatatatttaatataagga 310  Q
    ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12438819 ataacatgtgcaatattgcatatgttcagacaactaaaaataataacttttcattaaaaccaacaattatttattaaaaactatatatttaatataagga 12438720  T
Q  311 acccttataattttaagtagaatatttaacaaggtaatagacaaattgatttcccaccaaatttgtatgagagtttttattttcgcggctagacttctca 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12438719 acccttataattttaagtagaatatttaacaaggtaatagacaaattgatttcccaccaaatttgtatgagagtttttattttcgcgcctagacttctca 12438620  T
Q  411 tgagccatgcatattttccattttacctccgttccaattctaaaaattgaataggaaaaagatgattcaatttctataatgtgaattagggatgtcaatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  12438619 tgagccatgcatattttccattttacctccgttccaattctaaaaattgaataggaaaaagatgattcaatttctagaatctgaattagggatgtcaatg 12438520  T
Q  511 ggtatccatgagtatgggta 530  Q
    |||||||||| |||| ||||    
T  12438519 ggtatccatgggtataggta 12438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12439017 - 12438951
Alignment:
Q  1 tgaagacaaagggcccaagtgttacaaataaataaaataaagaacttgtgaagtaattttgccaatg 67  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  12439017 tgaagacaaagggcccaaatgttgcaaataaataaaataaagaacttgtgaagtaattttgccaatg 12438951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 27665220 - 27665118
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||||    
T  27665220 tttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaata 27665121  T
Q  305 taa 307  Q
    |||    
T  27665120 taa 27665118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 12016668 - 12016770
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||||||||||| ||||||| |||||||||||| ||||||| ||| ||||||||||    
T  12016668 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaactttttattgaaaaccaacaattattgattaaaagctacatatttaata 12016767  T
Q  305 taa 307  Q
    |||    
T  12016768 taa 12016770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 16126735 - 16126633
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  16126735 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaata 16126636  T
Q  305 taa 307  Q
    |||    
T  16126635 taa 16126633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 10690779 - 10690886
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatt 299  Q
    |||| ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||||||| ||| |||||||||||| ||||||| ||| |||||    
T  10690779 ttgggtttgtctaacatgtgcaatattgcacatgttaagttaactaaaattagtaatttttcattaaaaaccaacaattattgattaaaagctacatatt 10690878  T
Q  300 taatataa 307  Q
    ||||||||    
T  10690879 taatataa 10690886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 19228427 - 19228526
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| |||||||  || ||||||||||    
T  19228427 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaata 19228526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 14377426 - 14377528
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| ||||| || ||||||| || ||||| || ||||||||| ||||||||||| |||| |||||||||||||||| ||||||  || ||||||||||    
T  14377426 tttgtctaacacgtgcaatattgcacatgttaaggcaactaaaagtagtaactttttattgaaaaccaacaattatttgttaaaagttacatatttaata 14377525  T
Q  305 taa 307  Q
    |||    
T  14377526 taa 14377528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 22162237 - 22162151
Alignment:
Q  222 aatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||||| || ||||| || ||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  22162237 aatattgcacatgttaaggcaactaaaagtagtaactttttattgaaaccaacaattaattattaaaaatctacatagttaatataa 22162151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 22705456 - 22705558
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| ||| |||  || ||||||||||    
T  22705456 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattaatttaaagttacatatttaata 22705555  T
Q  305 taa 307  Q
    |||    
T  22705556 taa 22705558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 39904224 - 39904122
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||| ||||||||||| ||||||| ||| || |||||||    
T  39904224 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaatcaacaattattgattaaaagctacatgtttaata 39904125  T
Q  305 taa 307  Q
    |||    
T  39904124 taa 39904122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 4821323 - 4821380
Alignment:
Q  251 tagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  4821323 tagtaacttttcattgaaaaccaacaattatttattaaaagctacatatttaatataa 4821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 26230029 - 26229928
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaactatatatttaatat 305  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||| ||| ||||||||||||||| |||||||  || |||||||||||    
T  26230029 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaattttttattaaaaccaacaattattgattaaaagttacatatttaatat 26229930  T
Q  306 aa 307  Q
    ||    
T  26229929 aa 26229928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 16919335 - 16919228
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatt 299  Q
    |||| ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||  |||||| |||||||||||| |||||||  || |||||    
T  16919335 ttgggtttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaactttttgttgaaaaccaacaattattgattaaaagttacatatt 16919236  T
Q  300 taatataa 307  Q
    ||||||||    
T  16919235 taatataa 16919228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 290
Target Start/End: Original strand, 23932552 - 23932651
Alignment:
Q  192 tattataatttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||||||| ||| ||||| |||||||| ||||||| || ||||| |   ||||||||||||||||||| ||||| |||  |||||||||||||||||||    
T  23932552 tattataatatgggtttgtctaacatgtgcaatattgcacatgttaaaggaactaaaaatagtaactttacattgaaaaagaacaattatttattaaaaa 23932651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 4579965 - 4579902
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa 269  Q
    ||||| |||||||| |||||||||| ||||| ||  ||||||| ||||||||||||||||||||    
T  4579965 tttgtctaacatgtgcaatattacacatgttaaggaaactaaatatagtaacttttcattgaaa 4579902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 5583734 - 5583635
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  5583734 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 5583635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 15411799 - 15411696
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| |||||| |||| |||||||  ||||||| |||||||||||| ||| |||||||||    
T  15411799 tttgtctaacatgtgcaatattgcacatgttaaagtaactaaaagtagtaattttttattgaaaaacaacaataatttattaaaaagctacatatttaat 15411700  T
Q  304 ataa 307  Q
    ||||    
T  15411699 ataa 15411696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 34817581 - 34817644
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    |||||||||||  |||| || ||||||| ||||||||||||||||||||  |||||||||||||    
T  34817581 aactaaaaatatcaactatttattgaaaacaacaattatttattaaaaagttatatatttaata 34817644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 290
Target Start/End: Original strand, 7720111 - 7720201
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    |||||||||| |||||||| ||| ||| || ||||| | |||||||| | |||||||||||  ||| ||| ||||||||||||||| ||||    
T  7720111 ttggatttgtctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaacttttttttgaaaaacaacaattatttattcaaaa 7720201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 8771017 - 8770960
Alignment:
Q  251 tagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||||||| | ||| ||||||||||||||||||||  || |||||||||||||    
T  8771017 tagtaacttttcaataaaaaccaacaattatttattaaaagttacatatttaatataa 8770960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 34214128 - 34214051
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattattt 282  Q
    ||||| ||||||||| |||| | || ||||| |  |||||||||||||||| |||| |||| ||||||||||||||||    
T  34214128 tttgtctaacatgtataatactgcacatgttaaagcaactaaaaatagtaagtttttattgaaaaccaacaattattt 34214051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 45062207 - 45062284
Alignment:
Q  214 acatgtacaatattacatatgttcagacaactaaaaatagtaacttttcatt-gaaaccaacaattatttattaaaaa 290  Q
    ||||||||||||||| ||||||| | |||| ||||| | ||||||||| |||  ||| ||| ||||||||||||||||    
T  45062207 acatgtacaatattaaatatgttaaaacaattaaaagtggtaactttttattaaaaaacaaaaattatttattaaaaa 45062284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 2051626 - 2051718
Alignment:
Q  217 tgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||| ||||||  ||||||| | |||||||||| ||| || |||| |||||||  ||||||||||||||||||||  || |||||||||||||    
T  2051626 tgtataatattgtatatgttaaaacaactaaaattagcaagtttttattgaaaaacaacaattatttattaaaaatttaaatatttaatataa 2051718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 2060184 - 2060116
Alignment:
Q  241 caactaaaaatagtaacttttcattgaaac-caacaattatttattaaa-aactatatatttaatataa 307  Q
    ||||||||| || |||||||||||| |||  |||||||||||||||||| | ||| |||||||||||||    
T  2060184 caactaaaagtaataacttttcattaaaaatcaacaattatttattaaagagctacatatttaatataa 2060116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 19889342 - 19889444
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||||    
T  19889342 tttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaata 19889441  T
Q  305 taa 307  Q
    |||    
T  19889442 taa 19889444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 7170005 - 7170106
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatat 305  Q
    |||| |||||||| ||||||| || ||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||    
T  7170005 ttgtctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaatctacataattaatat 7170104  T
Q  306 aa 307  Q
    ||    
T  7170105 aa 7170106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 212 - 307
Target Start/End: Complemental strand, 5909452 - 5909356
Alignment:
Q  212 taacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| ||||||| || ||||| || |||||||||  |||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  5909452 taacatgtgcaatattgcacatgttaaggcaactaaaagcagtaacttttcattgaaaaccaacaattatttattaaaagctacatatttaatataa 5909356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 24250315 - 24250419
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| || |||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  24250315 tttgtctaacatgtgcaatattgcacatgttaaggaaactaaaagtattaacttttcattgaaaaccaacaattatttattaaaagctacatatttaata 24250414  T
Q  305 taagg 309  Q
    |||||    
T  24250415 taagg 24250419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 23982932 - 23982829
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcatt-gaaaccaacaattatttattaaaaac-tatatatttaat 303  Q
    ||||| |||||||| |||||||| | ||||| || ||||||||| |||||||||||||||  ||||||||||||| ||||||||||| || |||||||||    
T  23982932 tttgtctaacatgtgcaatattatacatgttaaggcaactaaaagtagtaacttttcattcaaaaccaacaattaattattaaaaacttaaatatttaat 23982833  T
Q  304 ataa 307  Q
    ||||    
T  23982832 ataa 23982829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 42750290 - 42750374
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||| ||||||| |||||||| |  |||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  42750290 tttgtttaacatgtgcaatattgcatatgttaaagcaactaaaaataataactttttattgaaaacaataattatttattaaaaa 42750374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 19868115 - 19868218
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |||||||||||| |||||| ||||||||| ||| || ||||||||||| |||||  ||||||||||||    
T  19868115 tttgtctaacatgtgcaatattgcacatgttaagacaactaaaagtagtaaattttcattgaaaaacaccaattatttatcaaaaagttatatatttaat 19868214  T
Q  304 ataa 307  Q
    ||||    
T  19868215 ataa 19868218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 12086107 - 12086005
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| ||||||||  |||||| || ||||| || ||||||||| |||||||||||| ||| ||| |||||||||||||||||||  || ||||||||||    
T  12086107 tttgtctaacatgtgtaatattgcacatgttaaggcaactaaaagtagtaacttttcgttgaaaatcaacaattatttattaaaagttaaatatttaata 12086008  T
Q  305 taa 307  Q
    |||    
T  12086007 taa 12086005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 39757286 - 39757184
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| ||||||||| ||| ||||||||||| ||||||| ||| ||||||||||    
T  39757286 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaatttttcattgaaaatcaacaattattgattaaaagctacatatttaata 39757187  T
Q  305 taa 307  Q
    |||    
T  39757186 taa 39757184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 3562057 - 3561952
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatattta 301  Q
    |||||||| |||||||| ||||||| || ||||| ||  ||||||||  ||||||||||||||| ||| ||| ||||||| ||||||| ||| |||||||    
T  3562057 ggatttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagcagtaacttttcattgaaaatcaataattattgattaaaagctacatattta 3561958  T
Q  302 atataa 307  Q
    ||||||    
T  3561957 atataa 3561952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 36548637 - 36548534
Alignment:
Q  205 atttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaat 303  Q
    |||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||| ||||||| |||||||||||| |||||| | || |||||||||    
T  36548637 atttgtctaacatgtgcaatattgcacatgttaagggaactaaaagtagtaattttttattgaaaaccaacaattattgattaaatattacatatttaat 36548538  T
Q  304 ataa 307  Q
    ||||    
T  36548537 ataa 36548534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 39869160 - 39869227
Alignment:
Q  242 aactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||  || |||||||||||||    
T  39869160 aactaaaaatagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaatataa 39869227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 384570 - 384504
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||||||||||||||||  ||||||||||| ||||||| ||| |||||||||||||    
T  384570 aactaaaagtagtaacttttcattgaaaatcaacaattattgattaaaagctacatatttaatataa 384504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 9331963 - 9332065
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||| ||||||||||| ||||||   || ||||||||||    
T  9331963 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaatcaacaattattgattaaatgttacatatttaata 9332062  T
Q  305 taa 307  Q
    |||    
T  9332063 taa 9332065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 24463131 - 24463029
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttatta-aaaactatatatttaata 304  Q
    ||||| ||||||||  |||||| || ||||| || ||||||||| |||||| || | ||||||| |||||| ||||||||| ||||||| ||||||||||    
T  24463131 tttgtctaacatgtgaaatatttcacatgttaaggcaactaaaagtagtaatttcttattgaaaacaacaagtatttattaaaaaactacatatttaata 24463032  T
Q  305 taa 307  Q
    |||    
T  24463031 taa 24463029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 12650831 - 12650907
Alignment:
Q  215 catgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||  | ||||| || |||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  12650831 catgtgcaatattgtacatgttaagccaactaaaaatagtaacttttcattgaaaactaccaattatttattaaaaa 12650907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 33342990 - 33343089
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  33342990 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 33343089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 47120370 - 47120268
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || |||||  |  |||||||| |||||| ||||||||| ||||||||||||||| ||||||   || ||||||||||    
T  47120370 tttgtctaacatgtgcaatattgcacatgttatggtaactaaaagtagtaatttttcattgaaaaccaacaattattgattaaatgttacatatttaata 47120271  T
Q  305 taa 307  Q
    |||    
T  47120270 taa 47120268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 307
Target Start/End: Original strand, 24699152 - 24699239
Alignment:
Q  221 caatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttatta-aaaactatatatttaatataa 307  Q
    ||||||| || ||||| |||| ||||||| |||||||||||||||| ||| |||||||||||||||| |||  || |||||||||||||    
T  24699152 caatattgcacatgttaagactactaaaa-tagtaacttttcattgaaaaacaacaattatttattataaagttacatatttaatataa 24699239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 38554246 - 38554342
Alignment:
Q  213 aacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||||||||||||||| | ||||| |   |||||||||| |||| |||| |||| ||| |||||||||| |||||||||  ||||||||||||||||    
T  38554246 aacatgtacaatattatacatgttaaactaactaaaaatcgtaaatttttattgaaaaacaacaattatatattaaaaatttatatatttaatataa 38554342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 290
Target Start/End: Complemental strand, 47457641 - 47457553
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttc-attgaaaccaacaattatttattaaaaa 290  Q
    |||||||| |||||||| ||||||| || ||||| | |||||||||| |||||| ||||  |||||||  |||||||||||||| ||||    
T  47457641 ggatttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagtagtaatttttttattgaaaataacaattatttatttaaaa 47457553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 46290012 - 46290111
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||| ||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  46290012 tttgtctaacatgtgcaaaattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 46290111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 33245646 - 33245688
Alignment:
Q  3 aagacaaagggcccaagtgttacaaataaataaaataaagaac 45  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  33245646 aagacaaaggaccaaagtgttacaaataaataagataaagaac 33245688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 530
Target Start/End: Complemental strand, 30604316 - 30604280
Alignment:
Q  494 aattagggatgtcaatgggtatccatgagtatgggta 530  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  30604316 aattagggatgtcaatgggtatccatgggtacgggta 30604280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 11610916 - 11611018
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||||    
T  11610916 tttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaata 11611015  T
Q  305 taa 307  Q
    |||    
T  11611016 taa 11611018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 51339360 - 51339258
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||  |||||||||    
T  51339360 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaaatagtaatttttcattgaaaaccaacaattattgattaaaagctacgtatttaata 51339261  T
Q  305 taa 307  Q
    |||    
T  51339260 taa 51339258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 37444149 - 37444232
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    |||| |||||||| ||||||| || ||||| || ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||    
T  37444149 ttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaactttttattgaaatcaacaattaattattaaaaa 37444232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 37055543 - 37055458
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||||||||||| |||||||| |   ||||||||||||||||||| ||||| |||  |||||||||||||||||||    
T  37055543 tttgtctaacatgtacaatattgcatatgttaaaggaactaaaaatagtaactttacattgaaaaagaacaattatttattaaaaa 37055458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 3863331 - 3863433
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||  |||||||||||||||| ||| || |||||||| ||||||| ||| ||||||||||    
T  3863331 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaggtagtaacttttcattgaaaatcagcaattattgattaaaagctacatatttaata 3863430  T
Q  305 taa 307  Q
    |||    
T  3863431 taa 3863433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 20938058 - 20938160
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaacc-aacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| || |||||||| ||||||| | |||||||||| |||||||| || ||||||||||    
T  20938058 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtaataactttttattgaaaactaacaattattgattaaaaattacatatttaata 20938157  T
Q  305 taa 307  Q
    |||    
T  20938158 taa 20938160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 54621397 - 54621292
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatattta 301  Q
    |||||||| |||||||| ||||||| |||||||| ||  || ||||| |||||| |||||||| ||| |||||||||||| ||||||   || |||||||    
T  54621397 ggatttgtctaacatgtgcaatattgcatatgttaaggtaattaaaagtagtaatttttcattaaaaaccaacaattattgattaaatgttacatattta 54621298  T
Q  302 atataa 307  Q
    ||||||    
T  54621297 atataa 54621292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 304
Target Start/End: Original strand, 2571265 - 2571369
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatt 299  Q
    |||| ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  ||||||||    
T  2571265 ttgggtttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatt 2571364  T
Q  300 taata 304  Q
    |||||    
T  2571365 taata 2571369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 30214186 - 30214103
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaa 289  Q
    ||||| |||||||| |||||||||| ||  | || ||||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  30214186 tttgtctaacatgtgcaatattacacattctaaggcaactaaaa-tagtaacttttcattgaaaatcaacaattatttattaaaa 30214103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 40497075 - 40497151
Alignment:
Q  232 atgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||| || ||||||||| ||||||||||| ||||||| ||||||||| |||||||||| ||| ||| |||||||||    
T  40497075 atgttaaggcaactaaaagtagtaactttttattgaaatcaacaattaattattaaaaatctacatagttaatataa 40497151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 38786465 - 38786398
Alignment:
Q  240 acaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||||||||||| |||| |||||||  ||||||||||||||||||| || | ||||| |||||    
T  38786465 acaactaaaaatagtaattttttattgaaaataacaattatttattaaaaaatacacatttagtataa 38786398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 40330432 - 40330382
Alignment:
Q  240 acaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    |||| ||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  40330432 acaattaaaaatagtaacttttaattgaaaacaacaataatttattaaaaa 40330382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 29686367 - 29686424
Alignment:
Q  251 tagtaacttttcattgaa-accaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||||||| |||| | ||||||||||||||||||| |||||||| ||||||||    
T  29686367 tagtaacttttcactgaatatcaacaattatttattaaaagctatatatgtaatataa 29686424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 32553374 - 32553470
Alignment:
Q  212 taacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||||||| ||||| ||  || ||||| |||||||||||||||| ||| ||| |||||||  ||||| | || |||||||||||||    
T  32553374 taacatgtgcaatattacacatgttaaggtaattaaaagtagtaacttttcattgaaaatcaataattattagttaaatattacatatttaatataa 32553470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 10307768 - 10307867
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||| | ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  10307768 tttgtctaacatgtgcaatattgcacatgataaggtaactaaaagtagcaaatttttattgaaaccaacaattatttaacaaaaagttatatatttaata 10307867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 12515650 - 12515551
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| ||| |||||||||||||||||  |||||  |||||||||||||    
T  12515650 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattaaaaccaacaattatttaacaaaaagttatatatttaata 12515551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 13495331 - 13495398
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||||||| |||||| |||| |||||||  |||||||||||||||||||| ||| |||||||||||||    
T  13495331 aactaaaagtagtaattttttattgaaaatcaacaattatttattaaaaacctacatatttaatataa 13495398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Complemental strand, 24569408 - 24569329
Alignment:
Q  212 taacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa 290  Q
    |||||||| |||||||  | ||||| ||||||||| ||||| |||||||| |||||||  || |||||||||||||||||    
T  24569408 taacatgtgcaatattggacatgttaagacaactacaaataataactttttattgaaaaacatcaattatttattaaaaa 24569329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 16875165 - 16875099
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||| |||| ||||||| ||||||||| || ||||||| ||| |||||||||||||    
T  16875165 aactaaaagtagtaattttttattgaaaaccaacaattgttgattaaaagctacatatttaatataa 16875099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 50364228 - 50364294
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| ||||||||| | ||||||| |||||||||||| |||||||  || |||||||||||||    
T  50364228 aactaaaagtagtaacttataattgaaaaccaacaattattgattaaaagttacatatttaatataa 50364294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 2379238 - 2379164
Alignment:
Q  214 acatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    |||||| ||||||| || ||||| | |||||||||| |||||| |||| ||||||   |||||||||||||||||||    
T  2379238 acatgtgcaatattgcacatgttaaaacaactaaaagtagtaagtttttattgaat--aacaattatttattaaaaa 2379164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 53537128 - 53537083
Alignment:
Q  246 aaaaatagtaacttttcattgaaac-caacaattatttattaaaaa 290  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||    
T  53537128 aaaaatagtaactttacattgaaaaacaacaattatttattaaaaa 53537083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 26486487 - 26486451
Alignment:
Q  272 aacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26486487 aacaattatttattaaaaaactatatatttaatataa 26486451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 32321898 - 32321800
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||||||||||||  |||||| |||||||| | | |||||||||||  ||||||| |||| ||| ||| ||| ||||| |||||| |||||||||||||    
T  32321898 tttgtataacatgtgtaatattgcatatgttaaaagaactaaaaatatcaactttt-attgaaaaacaaaaatcattta-taaaaattatatatttaata 32321801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 51618051 - 51618148
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| | ||||||||||  || || |||| | |||||  |||||||||||||||||||  |||||||||||||    
T  51618051 tttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagcagcaagtttttactgaaaaacaacaattatttattaaaa--tatatatttaata 51618148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 39150503 - 39150401
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||||    
T  39150503 tttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaata 39150404  T
Q  305 taa 307  Q
    |||    
T  39150403 taa 39150401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 6754474 - 6754575
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatat 305  Q
    |||| |||||||| ||||||| || ||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||    
T  6754474 ttgtctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaatctacataattaatat 6754573  T
Q  306 aa 307  Q
    ||    
T  6754574 aa 6754575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 8062205 - 8062308
Alignment:
Q  205 atttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaat 303  Q
    |||||| |||||||| |||||||  | ||||| ||  |||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  8062205 atttgtttaacatgtgcaatattgaacatgttaaggtaactaaaagtagtaacttttcattgaaaatcaacaattattgattaaaaactatatatttaat 8062304  T
Q  304 ataa 307  Q
    ||||    
T  8062305 ataa 8062308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 17919455 - 17919557
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| |||||||  | ||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||  || ||||||||||    
T  17919455 tttgtctaacatgtgcaatattgtacatgttaaggcaactaaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaata 17919554  T
Q  305 taa 307  Q
    |||    
T  17919555 taa 17919557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 207 - 307
Target Start/End: Original strand, 41624832 - 41624933
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatat 305  Q
    |||| |||||||| ||||||| || ||||| |  ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||    
T  41624832 ttgtctaacatgtgcaatattgcacatgttaaagcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaatctacataattaatat 41624931  T
Q  306 aa 307  Q
    ||    
T  41624932 aa 41624933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 23378681 - 23378597
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||| |||||||||||||||| | |||||||||| || |||||||| |||||||  ||||||||||| |||||||    
T  23378681 tttgtttaacatgtgcaatattacatatgttaaaacaactaaaattaataactttttattgaaaataacaattatttgttaaaaa 23378597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 313751 - 313853
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||| ||||||| |||||||||||| ||||||| ||| ||||||||||    
T  313751 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaatttttgattgaaaaccaacaattattgattaaaagctacatatttaata 313850  T
Q  305 taa 307  Q
    |||    
T  313851 taa 313853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 30363135 - 30363069
Alignment:
Q  243 actaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||||||||||||| |||| ||||||||||||| |||||||||| ||| |||||||||||||    
T  30363135 actaaaaatagtaactttttattgaaaaccaacaattaattattaaaaacctacatatttaatataa 30363069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 44918026 - 44918128
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||| |||||||  ||||||||||| ||||||| ||| ||||||||||    
T  44918026 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaaatttttattgaaaatcaacaattattgattaaaagctacatatttaata 44918125  T
Q  305 taa 307  Q
    |||    
T  44918126 taa 44918128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 51382373 - 51382450
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattattt 282  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||||    
T  51382373 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattt 51382450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 3121120 - 3121219
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| ||| |||| |||||||||||||||| ||  || ||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  3121120 tttgtctaatatgtgcaatattacatatgttaaggtaattaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 3121219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 6570113 - 6570059
Alignment:
Q  254 taacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  6570113 taacttttcattgaaaaccaacaattattgattaaaagctacatatttaatataa 6570059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 39930941 - 39930875
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaaccaac-aattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||| |||||||||||| |||  ||||||||||||||||||| |||| ||||||||    
T  39930941 aactaaaagtagtaatttttcattgaaaacaaataattatttattaaaaactacatatataatataa 39930875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 30288995 - 30288938
Alignment:
Q  251 tagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||| |||||||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  30288995 tagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaatataa 30288938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 1502896 - 1502797
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| ||||||| |||||||||||||  |||||  |||||||||||||    
T  1502896 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaaatttttattgaaaacaacaattatttaacaaaaagttatatatttaata 1502797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 32801169 - 32801102
Alignment:
Q  219 tacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttatta 286  Q
    ||||||||| |||| ||| |||| |||||||||| ||| |||| ||||||  ||||||||||||||||    
T  32801169 tacaatattgcataggttaagaccactaaaaataataagtttttattgaatgcaacaattatttatta 32801102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 39627748 - 39627685
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa 269  Q
    ||||| |||||||| |||||||||| ||||| ||  |||||||||||| ||||||| |||||||    
T  39627748 tttgtctaacatgtgcaatattacacatgttaaggaaactaaaaatagcaacttttaattgaaa 39627685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 9516628 - 9516685
Alignment:
Q  252 agtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||||||||| ||| || |||||||||||||||||  ||||||||||||||||    
T  9516628 agtaacttttcattgaaaaacaccaattatttattaaaaagttatatatttaatataa 9516685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 6520713 - 6520797
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa 290  Q
    ||||| ||||||||||||||||||| | ||| |   |||||||| ||  |||||||| |  ||| ||||||||||||||||||||    
T  6520713 tttgtctaacatgtacaatattacacaggttaaagaaactaaaagtaacaacttttcttgaaaaacaacaattatttattaaaaa 6520797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 23576595 - 23576491
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatt 299  Q
    |||| ||||| |||||| | ||||||| || ||||| ||  |||||||| ||  || |||| |||||||||||||||||||||  |||||  ||||||||    
T  23576595 ttgggtttgtctaacatctgcaatattgcacatgttaaggtaactaaaagtaacaagtttttattgaaaccaacaattatttaacaaaaagttatatatt 23576496  T
Q  300 taata 304  Q
    |||||    
T  23576495 taata 23576491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 23591699 - 23591799
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||| ||| || ||||| |  ||||||||| |||||| |||| |||||||  ||| ||||||||||||||||  ||||||||||||    
T  23591699 tttgtctaacatgtgcaacattgcacatgttaaagcaactaaaattagtaagtttttattgaaaatcaataattatttattaaaaagttatatatttaat 23591798  T
Q  304 a 304  Q
    |    
T  23591799 a 23591799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 32716341 - 32716237
Alignment:
Q  204 gatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaa 302  Q
    ||||||| |||||||| ||||||| || ||||| ||  |||||||   ||||||||||| ||| |||| |||||||||| ||||||   || ||||||||    
T  32716341 gatttgtctaacatgtgcaatattgcacatgttaaggtaactaaatgaagtaacttttcgttgaaaacaaacaattattgattaaatgttacatatttaa 32716242  T
Q  303 tataa 307  Q
    |||||    
T  32716241 tataa 32716237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 43671757 - 43671793
Alignment:
Q  271 caacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||||||||||||||  ||||||||||||||||    
T  43671757 caacaattatttattaaaagttatatatttaatataa 43671793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 52833602 - 52833546
Alignment:
Q  252 agtaacttttcattgaaaccaa-caattatttattaaaaactatatatttaatataa 307  Q
    ||||| |||||||||||| ||| |||||||||||||||| ||| ||||||| |||||    
T  52833602 agtaatttttcattgaaaacaaacaattatttattaaaagctacatatttattataa 52833546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 2830860 - 2830755
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatattta 301  Q
    |||||||| ||||||||||| |||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| |||||||    
T  2830860 ggatttgtctaacatgtacagtattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaaagctacatattta 2830761  T
Q  302 atataa 307  Q
    ||||||    
T  2830760 atataa 2830755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 5363069 - 5362967
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| |||||||||||| || ||||||| ||| ||||||||||    
T  5363069 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattgttgattaaaagctacatatttaata 5362970  T
Q  305 taa 307  Q
    |||    
T  5362969 taa 5362967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 1017919 - 1017852
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||  || |||||||||||||    
T  1017919 aactaaaagtagtaacttttcgttgaaaaccaacaattatttattaaaaatttacatatttaatataa 1017852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 22974713 - 22974647
Alignment:
Q  242 aactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||||||||||||| ||| ||||||||||| |||||||  || |||||||||||||    
T  22974713 aactaaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttacatatttaatataa 22974647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 23813688 - 23813754
Alignment:
Q  242 aactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| |||||||||||||||| ||| ||||||||||| |||||||  || |||||||||||||    
T  23813688 aactaaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttacatatttaatataa 23813754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 6016857 - 6016958
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||| ||| || ||| | ||||| |||||| |||||||||||||||| ||| ||||| |||||| |||||||  ||||||||||||    
T  6016857 tttgtctaacatgtgcaacattgcacatggtaagacatctaaaagtagtaacttttcattgaaaaacaacacttattttttaaaaagttatatatttaat 6016956  T
Q  304 at 305  Q
    ||    
T  6016957 at 6016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 17596388 - 17596445
Alignment:
Q  251 tagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  17596388 tagtaactttttattgaaaccaacaattaattattaaaaatctacatagttaatataa 17596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 304
Target Start/End: Complemental strand, 28943951 - 28943846
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatat 298  Q
    ||||| ||||| |||||||| ||||||| || ||||| ||  || ||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||    
T  28943951 tttgggtttgtctaacatgtgcaatattgcacatgttaaggtaattaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatat 28943852  T
Q  299 ttaata 304  Q
    ||||||    
T  28943851 ttaata 28943846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 14228302 - 14228203
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  || ||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  14228302 tttgtctaacatgtgcaatattgcacatgttaaggtaattaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 14228203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 17552763 - 17552664
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattt-attaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| || ||||||||||||||||| |  ||||| |||||||||||||    
T  17552763 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttatcgaaaccaacaattatttaacaaaaaattatatatttaata 17552664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 26602607 - 26602520
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaact 292  Q
    ||||| |||||||| ||||||| || || || ||  |||||||| |||||| |||||| ||||| |||||||||| ||||||||||||    
T  26602607 tttgtctaacatgtgcaatattgcacatattaaggaaactaaaagtagtaatttttcactgaaaaccaacaattaattattaaaaact 26602520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 33017726 - 33017825
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| ||| |||||||||||||||||  |||||  |||||||||||||    
T  33017726 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaattagcaagtttttattaaaaccaacaattatttaacaaaaagttatatatttaata 33017825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 17596315 - 17596369
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaactttt 261  Q
    |||| |||||||| ||||||| || ||||| |||||||||||| |||||||||||    
T  17596315 ttgtctaacatgtgcaatattgcacatgttaagacaactaaaagtagtaactttt 17596369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 31169903 - 31169837
Alignment:
Q  243 actaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    |||||||||||||| ||||| ||| ||||||| ||||| |||||||||| ||| |||||||||||||    
T  31169903 actaaaaatagtaatttttctttgaaaaccaataattaattattaaaaacctacatatttaatataa 31169837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 18332865 - 18332764
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||| ||| || ||||| ||| | |||||| |||||| |||| |||||||  ||| | |||||||||||||| |||||||||||||    
T  18332865 tttgtctaacatgtgcaacattgcacatgttaagatatctaaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctatatatttaat 18332766  T
Q  304 at 305  Q
    ||    
T  18332765 at 18332764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 29863479 - 29863394
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||| ||||||| || ||||| |   ||||||||||||||||||| ||||| |||  || ||||||||||||||||    
T  29863479 tttgtctaacatgtgcaatattgcacatgttaaaggaactaaaaatagtaactttacattgaaaaagaataattatttattaaaaa 29863394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 30623327 - 30623412
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||| ||| |||||| ||||| | |||||||| | |||||||||||  ||| ||| ||||||||||||||| ||||    
T  30623327 tttgtctaacatgtgcaacattacacatgttaaaacaactaatagtagtaactttttcttgaaaaacaacaattatttattcaaaa 30623412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 8103755 - 8103654
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatat 305  Q
    |||| |||||||| ||||||| || ||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||    
T  8103755 ttgtctaacatgtgcaatattgcacatgttaaggcaactaaaaatagtaactttttattgaaaccaacaattaattattaaaaatctacataattaatat 8103656  T
Q  306 aa 307  Q
    ||    
T  8103655 aa 8103654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 9184206 - 9184311
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatattta 301  Q
    |||||||| ||||||||  |||||| || ||||| ||  |||||||| |||||||||||||||| ||||||| ||||||| ||||||||||| |||||||    
T  9184206 ggatttgtctaacatgtgtaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaataattattgattaaaaactacatattta 9184305  T
Q  302 atataa 307  Q
    ||||||    
T  9184306 atataa 9184311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 4047420 - 4047516
Alignment:
Q  212 taacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||| ||||||||| |||||||| ||  |||||||| |||||||||||||||| |||||||||||| || ||||||| ||| |||||||||||||    
T  4047420 taacatatacaatattgcatatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattgttgattaaaagctacatatttaatataa 4047516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 216 - 307
Target Start/End: Original strand, 28629890 - 28629982
Alignment:
Q  216 atgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||||||| || ||||| |  |||||||||||| ||||||||||||| |||||||||||||||||||||||  || |||||||||||||    
T  28629890 atgtacaatattgcacatgttaaagcaactaaaaataataacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataa 28629982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 2795525 - 2795624
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| |||||||  || ||||||||||    
T  2795525 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaata 2795624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 30328503 - 30328401
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||| |||||||| |||| | |||||||| ||| |||||||||||| ||||||| ||| ||||||||||    
T  30328503 tttgtctaacatgtgcaatattgcacatgttaagataactaaaagtagtcatttttcattaaaaaccaacaattattgattaaaagctacatatttaata 30328404  T
Q  305 taa 307  Q
    |||    
T  30328403 taa 30328401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 11375996 - 11376063
Alignment:
Q  241 caactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||| |||||||||||||    
T  11375996 caactaaaagtagtaacttttcattgaaaatcaataattatttattaaaagctacatatttaatataa 11376063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 11636733 - 11636836
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| |||||||||||||||| ||||||||||||| ||||||||||  || |||||||||    
T  11636733 tttgtctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaat 11636832  T
Q  304 ataa 307  Q
    ||||    
T  11636833 ataa 11636836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 307
Target Start/End: Original strand, 15190869 - 15190976
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatt 299  Q
    |||| ||||| |||||||| ||||||| |||||||| ||  || ||||| |||||| ||||||||| |||| |||||||||| |||||||  || |||||    
T  15190869 ttgggtttgtctaacatgtgcaatattgcatatgttaaggtaagtaaaagtagtaatttttcattgaaaacaaacaattattgattaaaagttacatatt 15190968  T
Q  300 taatataa 307  Q
    ||||||||    
T  15190969 taatataa 15190976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 16174762 - 16174695
Alignment:
Q  242 aactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaac-tatatatttaatataa 307  Q
    |||||||| |||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||    
T  16174762 aactaaaagtagtaacttttcattgaaaaccaacaattaattattaaaaacttacatatttaatataa 16174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 29538775 - 29538827
Alignment:
Q  252 agtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaat 303  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||||||||||    
T  29538775 agtaacttttcattaaaaaccaacaattatttattaaaagctatatatttaat 29538827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 5958300 - 5958197
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| |||||||||| ||||| |   |||||||| |||||| ||||||||| ||| ||||||||| ||||||||||  || |||||||||    
T  5958300 tttgtctaacatgtgcaatattacacatgttaaagaaactaaaagtagtaatttttcattgaaaatcaacaattaattattaaaaatttacatatttaat 5958201  T
Q  304 ataa 307  Q
    ||||    
T  5958200 ataa 5958197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 15241091 - 15241024
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaac-caacaattatttatta-aaaactatatatttaatataa 307  Q
    |||||||||||||| | |||||||||||  |||||||||||||||| |||| ||||||||||||||||    
T  15241091 aactaaaaatagtatcatttcattgaaaaacaacaattatttattaaaaaattatatatttaatataa 15241024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 30839783 - 30839882
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  30839783 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 30839882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 197 - 307
Target Start/End: Original strand, 34578004 - 34578115
Alignment:
Q  197 taatttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactata 295  Q
    |||| ||| ||||| |||||||| ||||||| || ||||| ||  |||||||| || ||| ||||||||| ||| |||||||| || ||||||| ||| |    
T  34578004 taatatgggtttgtctaacatgtgcaatattccacatgttaaggtaactaaaagtaataatttttcattgaaaatcaacaattgttgattaaaagctaca 34578103  T
Q  296 tatttaatataa 307  Q
    ||||||||||||    
T  34578104 tatttaatataa 34578115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 36597581 - 36597680
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  36597581 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaaatttttattgaaaccaacaattatttaacaaaaagttatatatttaata 36597680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 6863594 - 6863657
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    |||||||| ||| || |||| ||||||||||||||||||||| ||||||  |||||||||||||    
T  6863594 aactaaaagtagcaagtttttattgaaaccaacaattatttaataaaaagttatatatttaata 6863657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 12642169 - 12642094
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattat 280  Q
    ||||| |||||||| |||||||  | ||||| || ||||||||| |||||| ||||||||| ||||||||||||||    
T  12642169 tttgtctaacatgtgcaatattgtacatgttaaggcaactaaaagtagtaatttttcattgaaaaccaacaattat 12642094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 315350 - 315407
Alignment:
Q  213 aacatgtacaatattacatatgttcaga-caactaaaaatagtaacttttcattgaaa 269  Q
    ||||||||||||||||||||| || | | |||||||||||||||| |||| |||||||    
T  315350 aacatgtacaatattacatatattaaaagcaactaaaaatagtaatttttgattgaaa 315407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 40512953 - 40513030
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattta 283  Q
    ||||| |||||||| ||||||| || ||||| ||  ||||| || |||||| |||| ||||||| |||||||||||||    
T  40512953 tttgtctaacatgtgcaatattgcacatgttaaggtaactagaagtagtaagtttttattgaaatcaacaattattta 40513030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 307
Target Start/End: Complemental strand, 7140640 - 7140533
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatt 299  Q
    |||| ||||| |||||||| ||||||| || ||||| ||  |||||||| ||||||||||| ||||||| |||||||||||| ||||||||||| |||||    
T  7140640 ttgggtttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaactttttattgaaaaccaacaattattgattaaaaactacatatt 7140541  T
Q  300 taatataa 307  Q
    ||||||||    
T  7140540 taatataa 7140533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 10129105 - 10129207
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||||||||||| |||||||||||| ||||||| ||| ||||||||||    
T  10129105 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaattagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaata 10129204  T
Q  305 taa 307  Q
    |||    
T  10129205 taa 10129207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 13328117 - 13328015
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| |||||||| ||  |||||||| |||||||||||||||| ||||||||||||||| ||||||   || ||||||||||    
T  13328117 tttgtctaacatgtgcaatattgcatatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaatgttacatatttaata 13328018  T
Q  305 taa 307  Q
    |||    
T  13328017 taa 13328015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 45516316 - 45516390
Alignment:
Q  232 atgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaactatatatttaatata 306  Q
    ||||| ||| |||||||| ||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||    
T  45516316 atgttaagataactaaaagtagtaactttttattgaaactaacaattatttattaaaagctacatatttaatata 45516390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 9743863 - 9743965
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| |||||||    ||||| |||||||||||| |||||| |||| ||||||| ||||||||||||||||||||  || ||||||||||    
T  9743863 tttgtctaacatgtgcaatattgtgcatgttaagacaactaaaagtagtaattttttattgaaaaccaacaattatttattaaaagttacatatttaata 9743962  T
Q  305 taa 307  Q
    |||    
T  9743963 taa 9743965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 40210997 - 40210895
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| |||||||| ||  |||||||| || ||||||||||||| ||||||||||||||| ||||||   || ||||||||||    
T  40210997 tttgtctaacatgtgcaatattgcatatgttaaggtaactaaaagtattaacttttcattgaaaaccaacaattattgattaaatgttacatatttaata 40210898  T
Q  305 taa 307  Q
    |||    
T  40210897 taa 40210895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 39701982 - 39701877
Alignment:
Q  203 ggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatattta 301  Q
    |||||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||| ||| ||||||||||||| | |||||||  || |||||||    
T  39701982 ggatttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcgttgaaaaccaacaattactaattaaaagttacatattta 39701883  T
Q  302 atataa 307  Q
    ||||||    
T  39701882 atataa 39701877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 8140595 - 8140671
Alignment:
Q  232 atgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    ||||| || ||||||||| |||| | |||||||||||| |||||||||||||||||||| ||| |||||||||||||    
T  8140595 atgttaaggcaactaaaagtagtgatttttcattgaaaaccaacaattatttattaaaagctacatatttaatataa 8140671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 26682069 - 26682172
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttc-attgaaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| | |||||||||| |||||| ||||  ||||||| |||||||||||||||||||| ||| | |||||||    
T  26682069 tttgtctaacatgtgcaatattgcacatgttaaaacaactaaaagtagtaatttttttattgaaaacaacaattatttattaaaaagctacacatttaat 26682168  T
Q  304 ataa 307  Q
    ||||    
T  26682169 ataa 26682172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 35678451 - 35678348
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| |||||||||||||||| ||||||||||||| ||||||||||  || |||||||||    
T  35678451 tttgtctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaat 35678352  T
Q  304 ataa 307  Q
    ||||    
T  35678351 ataa 35678348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 3306231 - 3306154
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattta 283  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||| |||| |||||||||||||||||||||    
T  3306231 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaagtttttattgaaaccaacaattattta 3306154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 38527822 - 38527928
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaac----aattatttattaaaaactatatattt 300  Q
    ||||| |||||||| ||||||| || ||||| || ||||||||| || ||||||||||||| ||||||||    | ||||||||||||| ||| ||||||    
T  38527822 tttgtctaacatgtgcaatattgcacatgttaaggcaactaaaagtaataacttttcattgaaaaccaacgattatttatttattaaaagctacatattt 38527921  T
Q  301 aatataa 307  Q
    |||||||    
T  38527922 aatataa 38527928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 34741807 - 34741739
Alignment:
Q  240 acaactaaaaatagtaacttttcattgaaaccaacaattatttatta-aaaactatatatttaatataa 307  Q
    |||||||||||||  ||||||| ||||||| ||| |||||||||||| |||| ||||||||||||||||    
T  34741807 acaactaaaaataacaacttttaattgaaaacaataattatttattaaaaaattatatatttaatataa 34741739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 9801709 - 9801772
Alignment:
Q  245 taaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaatataa 307  Q
    ||||| |||||||||||||||||||  ||||||||||| |||||||  ||||||||||||||||    
T  9801709 taaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttatatatttaatataa 9801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 14816302 - 14816199
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| ||||||||||| |||| ||||||||||||| ||||||||||  || |||||||||    
T  14816302 tttgtctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaactttttattgaaaaccaacaattaattattaaaaatttacatatttaat 14816203  T
Q  304 ataa 307  Q
    ||||    
T  14816202 ataa 14816199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 14829438 - 14829541
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| ||||||||||| |||| ||||||||||||| ||||||||||  || |||||||||    
T  14829438 tttgtctaacatgtgcaatattgcacatgttaaagaaactaaaagtagtaactttttattgaaaaccaacaattaattattaaaaatttacatatttaat 14829537  T
Q  304 ataa 307  Q
    ||||    
T  14829538 ataa 14829541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 39024998 - 39024931
Alignment:
Q  241 caactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaatataa 307  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  39024998 caactaaaagtaataactttttattgaaaccaacaattaattattaaaaatctacatagttaatataa 39024931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 2161389 - 2161487
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  ||||||||||||    
T  2161389 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaat 2161487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 6818018 - 6818103
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| |||||||| |||||||  ||||||| |   ||||||||||||||||||| ||||| |||  |||||||||||||||||||    
T  6818018 tttgtctaacatgtgcaatattgtatatgttaaaggaactaaaaatagtaactttacattgaaaaagaacaattatttattaaaaa 6818103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 19344005 - 19343913
Alignment:
Q  214 acatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatat 305  Q
    |||||| ||||||| || ||||| ||  ||| |||| |||||||||||||||| ||||||||||||||| | |||||  || |||||||||||    
T  19344005 acatgtgcaatattgcacatgttaaggtaaccaaaagtagtaacttttcattgaaaaccaacaattattgagtaaaagttacatatttaatat 19343913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 277756 - 277714
Alignment:
Q  3 aagacaaagggcccaagtgttacaaataaataaaataaagaac 45  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  277756 aagacaaaggaccaaagtgttacaaataaataagataaagaac 277714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 823899 - 823941
Alignment:
Q  3 aagacaaagggcccaagtgttacaaataaataaaataaagaac 45  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  823899 aagacaaaggaccaaagtgttacaaataaataagataaagaac 823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 4080576 - 4080467
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatata 297  Q
    ||||| ||||| ||||||||  |||||| || ||||| ||  || ||||| |||||||||||||||| |||| |||||||| ||| ||||||  || |||    
T  4080576 tttgggtttgtctaacatgtgtaatattgcacatgttaaggaaagtaaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacata 4080477  T
Q  298 tttaatataa 307  Q
    ||||||||||    
T  4080476 tttaatataa 4080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 4084725 - 4084616
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatata 297  Q
    ||||| ||||| ||||||||  |||||| || ||||| ||  || ||||| |||||||||||||||| |||| |||||||| ||| ||||||  || |||    
T  4084725 tttgggtttgtctaacatgtgtaatattgcacatgttaaggaaagtaaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacata 4084626  T
Q  298 tttaatataa 307  Q
    ||||||||||    
T  4084625 tttaatataa 4084616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 4103032 - 4102923
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatata 297  Q
    ||||| ||||| ||||||||  |||||| || ||||| ||  || ||||| |||||||||||||||| |||| |||||||| ||| ||||||  || |||    
T  4103032 tttgggtttgtctaacatgtgtaatattgcacatgttaaggaaagtaaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacata 4102933  T
Q  298 tttaatataa 307  Q
    ||||||||||    
T  4102932 tttaatataa 4102923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 15868135 - 15868035
Alignment:
Q  207 ttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaatat 305  Q
    |||||||||||||| ||||||  ||||| ||| | |||||||| ||  ||||||| |||| ||| ||||||||| ||||||||||  |||| ||||||||    
T  15868135 ttgtataacatgtataatattctatatg-tcaaaaaactaaaagtaacaactttttattgaaaaacaacaattacttattaaaaaaaatatttttaatat 15868037  T
Q  306 aa 307  Q
    ||    
T  15868036 aa 15868035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 35583426 - 35583467
Alignment:
Q  263 attgaaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||||| |||||||||||| ||||||| |||||||||||||    
T  35583426 attgaaaacaacaattatttgttaaaaattatatatttaata 35583467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 38048078 - 38048029
Alignment:
Q  242 aactaaaaatagtaacttttcattga-aaccaacaattatttattaaaaa 290  Q
    |||||||||||||||||||||||| | || || |||||||||||||||||    
T  38048078 aactaaaaatagtaacttttcattcacaaacaccaattatttattaaaaa 38048029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 11947080 - 11947016
Alignment:
Q  202 tggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg 266  Q
    ||||||||| |||||||||||||||| || | ||| | ||||||||||||  |||||||| ||||    
T  11947080 tggatttgtctaacatgtacaatattgcacaagttaaaacaactaaaaatgataactttttattg 11947016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 290
Target Start/End: Complemental strand, 13496915 - 13496823
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaa-tagtaacttttcattg-aaaccaacaattatttattaaaaa 290  Q
    ||||| ||||| |||||||| ||||||| || ||||| |   ||||||||| |||||||||| ||||| |||  |||||||||||||||||||    
T  13496915 tttgggtttgtctaacatgtgcaatattgcacatgttaaaggaactaaaaaatagtaactttacattgaaaaagaacaattatttattaaaaa 13496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 44091354 - 44091422
Alignment:
Q  240 acaactaaaaatagtaacttttcattgaaaccaacaattatttatt-aaaaactatatatttaatataa 307  Q
    ||||| |||| || ||| |||| ||||||| ||||||||||||||| |||||||| | |||||||||||    
T  44091354 acaacgaaaagtattaattttttattgaaaacaacaattatttattaaaaaactacaaatttaatataa 44091422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 13087 - 13189
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| |||||||| ||  |||||||| |||||| ||||||||| |||||||||||| || ||||||| ||| ||||||||||    
T  13087 tttgtctaacatgtgcaatattgcatatgttaaggtaactaaaagtagtaatttttcattgaaaaccaacaattgttgattaaaagctacatatttaata 13186  T
Q  305 taa 307  Q
    |||    
T  13187 taa 13189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 5691 - 5795
Alignment:
Q  205 atttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttc-attgaaa-ccaacaattatttattaaaaactatatatttaa 302  Q
    |||||| |||||||| ||||||| || ||||| ||  ||||||||||||||| ||||  ||||||| |||||||||||| ||||||||||| ||||||||    
T  5691 atttgtctaacatgtgcaatattgcacatgttaaggtaactaaaaatagtaatttttttattgaaaaccaacaattattgattaaaaactacatatttaa 5790  T
Q  303 tataa 307  Q
    |||||    
T  5791 tataa 5795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 23553570 - 23553674
Alignment:
Q  205 atttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttc-attgaaa-ccaacaattatttattaaaaactatatatttaa 302  Q
    |||||| |||||||| ||||||| || ||||| ||  ||||||||||||||| ||||  ||||||| |||||||||||| ||||||||||| ||||||||    
T  23553570 atttgtctaacatgtgcaatattgcacatgttaaggtaactaaaaatagtaatttttttattgaaaaccaacaattattgattaaaaactacatatttaa 23553669  T
Q  303 tataa 307  Q
    |||||    
T  23553670 tataa 23553674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 7349690 - 7349792
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| ||||| || ||||||| || ||||| || ||||||||| || ||||||||||||| |||||||||||||||| ||||||  || ||||||||||    
T  7349690 tttgtctaacacgtgcaatattgcacatgttaaggcaactaaaagtaataacttttcattgaaaaccaacaattatttgttaaaagttacatatttaata 7349789  T
Q  305 taa 307  Q
    |||    
T  7349790 taa 7349792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 16667561 - 16667458
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatatatttaat 303  Q
    ||||| |||||||| ||| ||| || ||||| ||||| |||||| |||||| ||||||||| ||| ||||| |||||||||||||| ||| |||||||||    
T  16667561 tttgtctaacatgtgcaacattgcacatgttaagacatctaaaagtagtaatttttcattgaaaaacaacacttatttattaaaaagctacatatttaat 16667462  T
Q  304 ataa 307  Q
    ||||    
T  16667461 ataa 16667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 41415698 - 41415631
Alignment:
Q  241 caactaaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaatataa 307  Q
    ||||||||| ||||||||||| |||||||  ||||||||||||||||||| ||| |||||||||||||    
T  41415698 caactaaaagtagtaacttttaattgaaaatcaacaattatttattaaaagctacatatttaatataa 41415631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 49228358 - 49228441
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaa 288  Q
    ||||| |||||||| ||||||| |||||||| ||  |||||||| |||||||||||||||| |||||||||||| || ||||||    
T  49228358 tttgtctaacatgtgcaatattgcatatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattgttgattaaa 49228441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 10658625 - 10658543
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattta 283  Q
    |||| ||||| |||||||| |||||||||| ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||    
T  10658625 ttgggtttgtctaacatgtgcaatattacacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattattta 10658543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 10872770 - 10872688
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattta 283  Q
    |||| ||||| |||||||| |||||||||| ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||    
T  10872770 ttgggtttgtctaacatgtgcaatattacacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattattta 10872688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 36000080 - 36000014
Alignment:
Q  242 aactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaatataa 307  Q
    |||||||| ||||||||||| ||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  36000080 aactaaaagtagtaactttttattgaaaaccaacaattattgattaaaagctacatatttaatataa 36000014  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 9759318 - 9759219
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  9759318 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 9759219  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 50352304 - 50352403
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattatttattaaaaa-ctatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| ||| || |||| |||||||||||||||||||||  |||||  |||||||||||||    
T  50352304 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagcaagtttttattgaaaccaacaattatttaacaaaaagttatatatttaata 50352403  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 10813656 - 10813587
Alignment:
Q  221 caatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaa 289  Q
    ||||||| |||||||| || ||||||||| || |||||||| ||||||| ||||||||||||| ||||||    
T  10813656 caatattgcatatgttaaggcaactaaaagtaataactttttattgaaaaccaacaattatttgttaaaa 10813587  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 29190982 - 29190909
Alignment:
Q  216 atgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaa 288  Q
    |||| ||||||| |||||||| ||  |||||||| |||||| ||||||||| ||||||||||||||| ||||||    
T  29190982 atgtgcaatattgcatatgttaaggtaactaaaagtagtaatttttcattgaaaaccaacaattattgattaaa 29190909  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 39539459 - 39539566
Alignment:
Q  200 tttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa-ctatata 297  Q
    ||||||||||| |||||||  ||| ||| || ||| | ||||| |||||  |||||| ||||||||| ||| ||||| |||||||||||||| ||| |||    
T  39539459 tttggatttgtctaacatgcgcaacattgcacatgctaagacatctaaacttagtaatttttcattgaaaaacaacacttatttattaaaaagctacata 39539558  T
Q  298 tttaatat 305  Q
    ||||||||    
T  39539559 tttaatat 39539566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 40049560 - 40049659
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattt-attaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| |   |||||||| |||||| |||| || ||||||||||||||||| |  ||||| |||||||||||||    
T  40049560 tttgtctaacatgtgcaatattgcacatgttaaagtaactaaaagtagtaagtttttatagaaaccaacaattatttaacaaaaaattatatatttaata 40049659  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 10389444 - 10389342
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa-ccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| |||||||||| |||||     |||||||| || |||||||| ||||||| |||||||||||| |||||||  || |||||| |||    
T  10389444 tttgtctaacatgtgcaatattacacatgttatagtaactaaaagtattaacttttaattgaaaaccaacaattattgattaaaagttacatatttcata 10389345  T
Q  305 taa 307  Q
    |||    
T  10389344 taa 10389342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 17409820 - 17409926
Alignment:
Q  201 ttggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttatt-aaaaactatatat 298  Q
    |||| ||||| |||||||| ||| ||| || ||||| | |||||||| | |||||||||||  ||| ||| ||||||||||||||| ||||| | |||||    
T  17409820 ttgggtttgtctaacatgtgcaacattgcacatgttaaaacaactaatagtagtaactttttcttgaaaaacaacaattatttattcaaaaaatttatat 17409919  T
Q  299 ttaatat 305  Q
    |||||||    
T  17409920 ttaatat 17409926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 39876847 - 39876909
Alignment:
Q  221 caatattacatatgttcagacaactaaaaatagtaacttttcattgaaaccaacaattattta 283  Q
    ||||||| || ||||| ||  |||||||| |||||| |||| |||||||||||||||||||||    
T  39876847 caatattgcacatgttaaggtaactaaaagtagtaagtttttattgaaaccaacaattattta 39876909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Original strand, 25843292 - 25843396
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaa--ctatatatttaa 302  Q
    ||||| ||||||||||||||| | | ||||| |  ||||||||| ||||||||||| |||| ||| ||||||  |||| |||||||   |||||||||||    
T  25843292 tttgtctaacatgtacaatataatacatgttaaagcaactaaaagtagtaactttttattgaaaaacaacaaccatttgttaaaaagcttatatatttaa 25843391  T
Q  303 tataa 307  Q
    |||||    
T  25843392 tataa 25843396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 40681960 - 40682013
Alignment:
Q  216 atgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaa 269  Q
    |||| ||||||| |||||||| || |||||||||||||||| |||| |||||||    
T  40681960 atgtgcaatattgcatatgttaagtcaactaaaaatagtaattttttattgaaa 40682013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 47327069 - 47326968
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttatt-aaaaactatatatttaat 303  Q
    ||||| |||| ||| ||| ||| || ||||| ||||| |||||| |||||| ||||||||| ||| ||| | ||||||||| |||||||| |||||||||    
T  47327069 tttgtctaacctgtgcaacattgcacatgttaagacatctaaaagtagtaatttttcattgaaaaacaaaacttatttattaaaaaactacatatttaat 47326970  T
Q  304 at 305  Q
    ||    
T  47326969 at 47326968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 47341865 - 47341764
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttatt-aaaaactatatatttaat 303  Q
    ||||| |||| ||| ||| ||| || ||||| ||||| |||||| |||||| ||||||||| ||| ||| | ||||||||| |||||||| |||||||||    
T  47341865 tttgtctaacctgtgcaacattgcacatgttaagacatctaaaagtagtaatttttcattgaaaaacaaaacttatttattaaaaaactacatatttaat 47341766  T
Q  304 at 305  Q
    ||    
T  47341765 at 47341764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 52955 - 52856
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| |||||||  || ||||||||||    
T  52955 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaata 52856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 145679 - 145778
Alignment:
Q  206 tttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattg-aaaccaacaattatttattaaaaactatatatttaata 304  Q
    ||||| |||||||| ||||||| || ||||| ||  |||||||| |||||||||||||||| ||||||||||||||| |||||||  || ||||||||||    
T  145679 tttgtctaacatgtgcaatattgcacatgttaaggtaactaaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaata 145778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 94199 - 94095
Alignment:
Q  202 tggatttgtataacatgtacaatattacatatgttcagacaactaaaaatagtaacttttcattgaaacc-aacaattatttattaaaaa-ctatatatt 299  Q
    ||||||||| |||||| | ||| ||| || ||||| |  ||||||||| |||||| |||| ||||||| | || |||||||||||||||| |||||||||    
T  94199 tggatttgtctaacatatgcaacattgcacatgttaaatcaactaaaagtagtaagtttttattgaaaactaataattatttattaaaaaactatatatt 94100  T
Q  300 taata 304  Q
    |||||    
T  94099 taata 94095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 43503 - 43566
Alignment:
Q  245 taaaaatagtaacttttcattgaaac-caacaattatttattaaaaactatatatttaatataa 307  Q
    ||||| |||||| ||||||||||||  ||||||||||| |||||||  ||||||||||||||||    
T  43503 taaaagtagtaatttttcattgaaaatcaacaattattaattaaaagttatatatttaatataa 43566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 191455 - 191388
Alignment:
Q  241 caactaaaaatagtaacttttcattgaaaccaaca-attatttattaaaaactatatatttaatataa 307  Q
    ||||||||| | |||| |||||||||||| || |  ||||||||||||||| ||||||||||||||||    
T  191455 caactaaaagtggtaatttttcattgaaaacatccgattatttattaaaaattatatatttaatataa 191388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 8556 - 8488
Alignment:
Q  240 acaactaaaaatagtaacttttcattgaaaccaacaattatttatta-aaaactatatatttaatataa 307  Q
    ||||| |||| || ||| |||| ||||||| |||||||||||||||| ||||||| | |||||||||||    
T  8556 acaacgaaaagtattaattttttattgaaaacaacaattatttattaaaaaactacaaatttaatataa 8488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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