View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-20 (Length: 402)
Name: NF1883-Insertion-20
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 43746561 - 43746158
Alignment:
| Q |
8 |
cagaaatattgaatcaaaggccagcaaggctcctttattacttggtgtgcaagttttggcatttgaagtgtgtttttgtggccctcacccatactcactg |
107 |
Q |
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| T |
43746561 |
cagaaatattgaatcaaaggccagcaaggctcctttattacttggtgtgcaagttttgacatttgaagtgtgtttttgtggccctcacccatactcactg |
43746462 |
T |
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| Q |
108 |
tcactgccatttccttctcgtttctaatcacactcaaagaaatcttcttctttcactttatcctttctgttacatttatttttcacccctggctacaaga |
207 |
Q |
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| T |
43746461 |
tcactgccatttccttctcatttctaatcacactcaaagaaatcttcttctttcactttatcctttctgttacatttatttttcaccccttgctacaaga |
43746362 |
T |
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| Q |
208 |
aacaac-------------cttattgtaactataagtaataaccacatttcttttttaatctttattttatgtatgtattaggttttcatgtataaatct |
294 |
Q |
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| T |
43746361 |
aacaacactgtcatcatcatttattgtaactataagtaataaccacatttcttttttaatctttattt----tatgtattaggttttcatgtataaatct |
43746266 |
T |
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| Q |
295 |
catgattctgaattagacgatggttaacaaggttgtaagtttttcccttcagtgtttcggtgctggcttgtgttgtctttgttttcgttttcgttttctc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43746265 |
catgattctgaattagacgatggttaacaaggttgtaagtttttcccttcagtgtttcggtgctggcttgtgttgtctttgttttcgttttcgttttctc |
43746166 |
T |
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| Q |
395 |
cattgtac |
402 |
Q |
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| T |
43746165 |
cattgtac |
43746158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 42553514 - 42553566
Alignment:
| Q |
49 |
ttggtgtgcaagttttggcatttgaagtgtgtttttgtggccctcacccatac |
101 |
Q |
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| T |
42553514 |
ttggtgtgcaagttttgtcatttggagtgtgtttttgtggccctcgcccatac |
42553566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Original strand, 39118780 - 39118813
Alignment:
| Q |
230 |
gtaataaccacatttcttttttaatctttatttt |
263 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
39118780 |
gtaagaaccacatttcttttttaatctttatttt |
39118813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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