View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-21 (Length: 395)
Name: NF1883-Insertion-21
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-21 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 7834466 - 7834122
Alignment:
| Q |
7 |
aaatacgatataaattataacataaagcnnnnnnnctcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatc |
106 |
Q |
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| T |
7834466 |
aaatacgatataaattataacataaagcaaaaaaactcaatatgacaatgattaaagacccactttctcatccaccaacaggaggttcatacatgttatc |
7834367 |
T |
|
| Q |
107 |
tcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattgagatcgaa |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7834366 |
tcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaccagacaccattgagatcgaa |
7834267 |
T |
|
| Q |
207 |
gtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagcttaaagtccaga |
306 |
Q |
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| T |
7834266 |
gtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaagaacaatgtgggaagaatgttggaaaaaagaagcagcttaaagtccaga |
7834167 |
T |
|
| Q |
307 |
accgagtttttaagtatatagtaaatcaaagtataacaataatta |
351 |
Q |
| |
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| T |
7834166 |
acaaagtttttaagtatatagtaaaccaaagtataacaataatta |
7834122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 7805068 - 7804722
Alignment:
| Q |
8 |
aatacgatataaattataacataaagcnnnnnnnctcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatct |
107 |
Q |
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| T |
7805068 |
aatacgatataaattataacataaagcaaaaaa-ctcaatatgacaatgattaaagtcccactttctcatccaccaacatgaggttcatacatgttatct |
7804970 |
T |
|
| Q |
108 |
cgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattgagatcgaag |
207 |
Q |
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| T |
7804969 |
cgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacctgaatcttcagcttgaggtccttcttgccaacagacaccattgagatcgaag |
7804870 |
T |
|
| Q |
208 |
tgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagc---ttaa-agtcc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
7804869 |
tgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagctaattaacagtcc |
7804770 |
T |
|
| Q |
304 |
agaaccgagtttttaagtatatagtaaatcaaagtataacaataatta |
351 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7804769 |
agaaccgagtttttaagtatatagtaaaccaaagtataacaataatta |
7804722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 7785005 - 7784657
Alignment:
| Q |
8 |
aatacgatataaattataacataaagcnnnnnnn-ctcaatatgacaatgattaaagacccactttctcatccaccaacatgaggttcatacatgttatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7785005 |
aatacgatataaattataacataaagcaaaaaaaactcaatatgacaatgattaaagtcccactttctcatccaccaacatgaggttcatatatgttatc |
7784906 |
T |
|
| Q |
107 |
tcgttagccttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaccagacaccattgagatcgaa |
206 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7784905 |
tcgttaggcttttgtttgtcatgaatgcaccaaatatgtacttgaaacccgaatcttcagcttgaggtccttcttgccaacagacaccattgagatcgaa |
7784806 |
T |
|
| Q |
207 |
gtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagc---ttaa-agtc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
7784805 |
gtgaaaacggaggccatagcaacgatgtttggtttgcaacgcaccaaaaaggaacaatgtgggaagaatgttggaaaaaagaagcagctaattaacagtc |
7784706 |
T |
|
| Q |
303 |
cagaaccgagtttttaagtatatagtaaatcaaagtataacaataatta |
351 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7784705 |
cagaaccgagtttttaagtatatagtaaaccaaagtataacaataatta |
7784657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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