View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-22 (Length: 374)
Name: NF1883-Insertion-22
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-22 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 46011352 - 46011718
Alignment:
| Q |
8 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagnnnnnnntgaatgagaatcatgtattggaaaaaatgatggaggaaggt |
107 |
Q |
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| T |
46011352 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagaaaaaaatgaacgagaatcatggattggaaaaaatgatggaggaaggt |
46011451 |
T |
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| Q |
108 |
gaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
207 |
Q |
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| T |
46011452 |
gaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
46011551 |
T |
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| Q |
208 |
ttttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcaggaccggaagattacaatggtaataatggaaggatggtaac |
307 |
Q |
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| T |
46011552 |
ttttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcaggaccagaagattacaatggtaataatggaaggatggtaac |
46011651 |
T |
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| Q |
308 |
aatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggatatacaa |
374 |
Q |
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| T |
46011652 |
aatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggatatacaa |
46011718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 69 - 374
Target Start/End: Original strand, 15924463 - 15924768
Alignment:
| Q |
69 |
aatgagaatcatgtattggaaaaaatgatggaggaaggtgaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaag |
168 |
Q |
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| T |
15924463 |
aatgagaattatgcattggaaaaattggtggagaaaggtgatggaaaagatgatttttttgtatatggagcaaagttaacatttgtagacttggaagaag |
15924562 |
T |
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| Q |
169 |
gtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcagg |
268 |
Q |
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| T |
15924563 |
ctgatttatatggtgtaaagcttaatggaaagaaacctattagggcgaattgtgatttacgtggtgtcggtgatcaaggagttgttttggtttttccagg |
15924662 |
T |
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| Q |
269 |
accggaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggat |
368 |
Q |
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| T |
15924663 |
tccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttgaaagagaatggggt |
15924762 |
T |
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| Q |
369 |
atacaa |
374 |
Q |
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| T |
15924763 |
atacaa |
15924768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 67 - 356
Target Start/End: Original strand, 13116279 - 13116568
Alignment:
| Q |
67 |
tgaatgagaatcatgtattggaaaaaatgatggaggaaggtgaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaaga |
166 |
Q |
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| T |
13116279 |
tgaatgagaatcatgtattggaaaaaattgtggaggacggtgaaggcaaagagcattttatagtttatggagctaagttaacatttgtagacttggaaga |
13116378 |
T |
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| Q |
167 |
aggtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttca |
266 |
Q |
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| T |
13116379 |
ggctgatttttacgagataaagattaatggacagaaacccattatggtaaattgtgatttccgcggtgttcatgatgaaggagttgttttggttcttcca |
13116478 |
T |
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| Q |
267 |
ggaccggaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaattgaaatgtaaactagca |
356 |
Q |
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| T |
13116479 |
ggaccagaagatactgatggtaataatggaaggatgataacagtttcattgccaggaaaagaacttgaccagctgaaatgtaaactagca |
13116568 |
T |
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