View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1883-Insertion-23 (Length: 352)
Name: NF1883-Insertion-23
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-23 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 9574296 - 9573949
Alignment:
| Q |
7 |
atctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
9574296 |
atctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcatggtcaagtgcgagtctt |
9574197 |
T |
|
| Q |
107 |
acatgttccctatcattatcgatttgctattatcttcacaaagggacttatgttgctactttttatagtgattttagag---atttaactttcaatttcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9574196 |
acatgttccctatcattatcgatttgctaacatcttcacaaagggacttacgttgctactttttatagtgattttagagattatttaactttcaatttcg |
9574097 |
T |
|
| Q |
204 |
attgtggagatggctaagagactattttatgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttcttttatctttggg |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
9574096 |
attttggagatggctaagagactattttatgtatatatattattgatcaaatgaatgaaatgacgatcaatatctcttacaattttc-tttatctttgga |
9573998 |
T |
|
| Q |
304 |
tttgggctatgtccctccatacatatttgttttgtttttattaataata |
352 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9573997 |
tttgggctatgtccctccatacatacttgttttgtttttattaataata |
9573949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 345
Target Start/End: Complemental strand, 9565406 - 9565096
Alignment:
| Q |
32 |
ataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttccctatcattatcgattt |
131 |
Q |
| |
|
||||||||||||| ||||||| ||||| |||||||||||| | ||||||||||||| | ||||||||| ||||| ||||||| | | || |||||||||| |
|
|
| T |
9565406 |
ataacacaccaaacacattgatatgaacatacacttcttgggcgaaaaagtttctcccagtcaagtgcgagtctaacatgtttcatgtccttatcgattt |
9565307 |
T |
|
| Q |
132 |
gctattatcttcacaaagggacttatgttgctactttttatagtgattttagagatttaactttcaatttcgattgtggagatggctaagagactatttt |
231 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||| ||||||||||||||| | ||||||||||||| || |||||||| ||| |||||||||| |
|
|
| T |
9565306 |
gctaacatcttcacaaagagacttacgttgctacttttta--gtgattttagagattcatctttcaatttcgactgaggagatggttaaaagactatttt |
9565209 |
T |
|
| Q |
232 |
atgtatatatatcattgatcaaatgaatgaaatgacgatcaatatttcttacaattttcttttatctttgggtttgggctatgtccctccatacatattt |
331 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
9565208 |
atatatatatatcattgatcaaataaatgaaatgacgaccaatatctcttacaattttc-tttatctttgggtttgggttatgtcccttcatatatattt |
9565110 |
T |
|
| Q |
332 |
gttttgtttttatt |
345 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
9565109 |
ggttggtttttatt |
9565096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 8045217 - 8045304
Alignment:
| Q |
7 |
atctatccgacaattcagttcaacaataacacaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtca |
94 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||| |||| ||||| |||||||||| || | ||||||||| ||| |||||| |
|
|
| T |
8045217 |
atctatccgacaatccagttcaacatcaacgcaccaaacacatcgaaattgatatacactttgtgcgggaaaaagttactcgcggtca |
8045304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 28495288 - 28495210
Alignment:
| Q |
37 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
115 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
|
|
| T |
28495288 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
28495210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 29807697 - 29807619
Alignment:
| Q |
37 |
acaccaaatacattgaaatgaatatacacttcttgtgtgaaaaagtttctcacggtcaagtgccagtcttacatgttcc |
115 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| |||| ||| ||||| ||| |||||| |||| || ||||||||||| |
|
|
| T |
29807697 |
acaccaaacacattgaaatggatatacactttgtgtgggaagaagttgctcgcggtcaggtgcatgtattacatgttcc |
29807619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University