View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-Insertion-26 (Length: 331)

Name: NF1883-Insertion-26
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-Insertion-26
NF1883-Insertion-26
[»] chr8 (16 HSPs)
chr8 (171-329)||(30475528-30475686)
chr8 (22-135)||(27415230-27415343)
chr8 (9-161)||(30478389-30478541)
chr8 (24-127)||(40995803-40995907)
chr8 (13-133)||(15111847-15111968)
chr8 (25-105)||(12000146-12000226)
chr8 (61-143)||(7299854-7299935)
chr8 (22-121)||(7304949-7305047)
chr8 (46-161)||(885708-885825)
chr8 (14-108)||(6108545-6108638)
chr8 (10-133)||(9799226-9799350)
chr8 (71-127)||(7222830-7222885)
chr8 (43-97)||(32286060-32286114)
chr8 (37-95)||(39609702-39609760)
chr8 (118-154)||(5493833-5493869)
chr8 (43-95)||(34935132-34935184)
[»] chr7 (12 HSPs)
chr7 (22-161)||(37720502-37720641)
chr7 (15-159)||(28710341-28710485)
chr7 (14-116)||(15972128-15972230)
chr7 (22-136)||(42468918-42469032)
chr7 (24-109)||(8022209-8022294)
chr7 (24-125)||(27916414-27916515)
chr7 (13-105)||(47903891-47903981)
chr7 (10-127)||(30486932-30487050)
chr7 (9-127)||(46777270-46777388)
chr7 (104-154)||(19434499-19434549)
chr7 (100-153)||(33999579-33999632)
chr7 (120-160)||(19689605-19689645)
[»] chr1 (15 HSPs)
chr1 (10-161)||(19940547-19940698)
chr1 (28-161)||(6754061-6754195)
chr1 (24-135)||(46289776-46289887)
chr1 (11-130)||(17063841-17063960)
chr1 (14-133)||(4941171-4941290)
chr1 (10-127)||(1408596-1408714)
chr1 (15-138)||(34663092-34663216)
chr1 (10-160)||(45484989-45485139)
chr1 (26-103)||(4635751-4635828)
chr1 (29-127)||(42514223-42514323)
chr1 (12-108)||(16589135-16589232)
chr1 (35-138)||(43456658-43456763)
chr1 (37-160)||(48611678-48611802)
chr1 (46-135)||(32503014-32503104)
chr1 (43-95)||(3430590-3430642)
[»] chr3 (12 HSPs)
chr3 (11-166)||(36545122-36545277)
chr3 (11-166)||(36563037-36563192)
chr3 (23-126)||(50175346-50175449)
chr3 (43-127)||(25938587-25938671)
chr3 (10-124)||(29247289-29247403)
chr3 (10-97)||(42388717-42388804)
chr3 (10-133)||(8936056-8936180)
chr3 (14-154)||(26841258-26841396)
chr3 (13-108)||(46930020-46930115)
chr3 (29-95)||(42411032-42411098)
chr3 (27-105)||(1294911-1294989)
chr3 (43-127)||(26141684-26141769)
[»] chr4 (18 HSPs)
chr4 (11-160)||(43159833-43159982)
chr4 (13-144)||(38509908-38510038)
chr4 (25-107)||(3427858-3427940)
chr4 (13-105)||(27756450-27756542)
chr4 (37-135)||(21858817-21858917)
chr4 (37-135)||(21914680-21914780)
chr4 (12-160)||(4687312-4687460)
chr4 (22-154)||(53482376-53482508)
chr4 (27-160)||(19328815-19328949)
chr4 (28-134)||(20032911-20033018)
chr4 (24-105)||(37193577-37193659)
chr4 (14-127)||(2652918-2653032)
chr4 (41-121)||(46871305-46871385)
chr4 (27-115)||(3913646-3913734)
chr4 (55-108)||(25474654-25474707)
chr4 (37-85)||(55997772-55997820)
chr4 (104-151)||(10110132-10110179)
chr4 (16-127)||(24355768-24355879)
[»] chr2 (14 HSPs)
chr2 (10-133)||(6983157-6983279)
chr2 (11-139)||(27322727-27322856)
chr2 (11-118)||(25627379-25627487)
chr2 (28-133)||(4614255-4614360)
chr2 (27-133)||(33085340-33085441)
chr2 (22-124)||(3037402-3037504)
chr2 (47-133)||(43077177-43077263)
chr2 (36-154)||(16634422-16634541)
chr2 (60-135)||(38318804-38318879)
chr2 (35-85)||(1991934-1991984)
chr2 (8-91)||(24137984-24138067)
chr2 (21-133)||(9116379-9116492)
chr2 (15-105)||(9521069-9521159)
chr2 (43-108)||(34353289-34353354)
[»] scaffold0272 (1 HSPs)
scaffold0272 (10-127)||(6084-6202)
[»] chr5 (14 HSPs)
chr5 (27-127)||(36603677-36603778)
chr5 (13-117)||(36974065-36974169)
chr5 (14-159)||(21067597-21067743)
chr5 (13-138)||(24233156-24233282)
chr5 (14-132)||(24434098-24434218)
chr5 (39-127)||(39753298-39753387)
chr5 (38-130)||(1179953-1180045)
chr5 (13-138)||(28988360-28988488)
chr5 (22-105)||(19187129-19187212)
chr5 (28-117)||(12383923-12384012)
chr5 (55-109)||(38282519-38282573)
chr5 (45-127)||(38353626-38353709)
chr5 (61-133)||(14122929-14123002)
chr5 (13-85)||(6677065-6677137)
[»] scaffold0009 (1 HSPs)
scaffold0009 (47-135)||(106465-106553)
[»] scaffold0027 (1 HSPs)
scaffold0027 (10-127)||(14206-14324)
[»] scaffold0693 (1 HSPs)
scaffold0693 (22-154)||(1150-1282)
[»] scaffold0316 (1 HSPs)
scaffold0316 (28-126)||(1280-1379)
[»] chr6 (1 HSPs)
chr6 (55-104)||(6253521-6253570)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 171 - 329
Target Start/End: Complemental strand, 30475686 - 30475528
Alignment:
Q  171 gctctatatttaatcctcattatgaagaattagagccgatgacaattggttgaacaacttgaacaaagttttagactcgacaattaatttgttgaatatg 270  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  30475686 gctctatatttaatcctcattaggaaaaattagagccgatgacaattggttgaacaacttgaacagagttttagacccgacaattaatttgttgaatatg 30475587  T
Q  271 ttcatgaattaaatgaaattatgtacgtactatatgctctcattcgtccgggtttaaga 329  Q
    || |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  30475586 tttatgaattaaatgaaattatgtgtgtactatatgctctcattcgtccgggttaaaga 30475528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 27415343 - 27415230
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||||  || ||| ||| ||||| ||||| || |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||    
T  27415343 aggaatcaaatataggaagcattacattgaaacttatgttgtcaacttctcaaaaatatcaaaagtgttatttttactttaaaatttccttttttagttt 27415244  T
Q  122 ccttaatcagtgtc 135  Q
    ||||||||||||||    
T  27415243 ccttaatcagtgtc 27415230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 30478389 - 30478541
Alignment:
Q  9 agggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaattt 108  Q
    ||||||| |||| || || |||||| |||||||||||| ||| ||||||| ||||||| | ||||||| || ||||||| ||||||||| |||||| |||    
T  30478389 agggcaccggttaagaaagcaaatgtagtaagtattgcgttgaaacttgtactgtcaatttctcaaaagcacaaaaagtattattttcattttaaacttt 30478488  T
Q  109 ccctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccct 161  Q
    || ||||||| |||||||| | ||| ||||| |||| ||||||||| ||||||    
T  30478489 ccttttttaggttccttaacccgtgccccgagggcaccggttaacatgaccct 30478541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 40995907 - 40995803
Alignment:
Q  24 gaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcccttt-ttagtttc 122  Q
    |||||||||| |||||||||| ||||| || ||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||    
T  40995907 gaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttccttttcttagtttc 40995808  T
Q  123 cttaa 127  Q
     ||||    
T  40995807 attaa 40995803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 15111968 - 15111847
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc-cc 111  Q
    |||||||| |||||||||||  ||||||| ||  |||  |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||       
T  15111968 cactggttaaggaatcaaatctagtaagttttatattaaaacttgtgttgtcaactcctaaaaaatataaaaagtgttattttcattttaaaatttcttt 15111869  T
Q  112 tttttagtttccttaatcagtg 133  Q
    |||||||||||||||| |||||    
T  15111868 tttttagtttccttaaccagtg 15111847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 12000226 - 12000146
Alignment:
Q  25 aatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||  ||||||| |||||||| | |||||||||||||||||    
T  12000226 aatcaaatgtagtaagtgttgcattggaatttgtgctgtcaacatctcaaaagcataaaaaatattattttcactttaaaa 12000146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 7299935 - 7299854
Alignment:
Q  61 tgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaatcagtgtcccgaaggc 143  Q
    |||||||||||||||| |||||||  ||||||||||| |||||||||| |||||||||||||||||| ||||| || ||||||    
T  7299935 tgtcaactcctcaaaagcataaaatatgttattttcaatttaaaattt-cctttttagtttccttaaccagtgccctgaaggc 7299854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 7305047 - 7304949
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||| ||||||| || || ||||  |||| |||||||| |||||||||||||||| || ||||  |||||||||||||||||||||| ||||||||||||    
T  7305047 aggagtcaaatgtagcaaatattatattgaaacttgtgttgtcaactcctcaaaagcagaaaatatgttattttcactttaaaattt-cctttttagttt 7304949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 885708 - 885825
Alignment:
Q  46 cattggaacttgtgctgtcaactcctcaaaaacataaaaag--tgttattttcactttaaaatttccctttttagtttccttaatcagtgtcccgaaggc 143  Q
    |||||||| ||||| ||||||||||| ||||  |||||||   ||||||||||| |||||||||||| ||||||| |||||||| || || ||||| | |    
T  885708 cattggaatttgtgttgtcaactccttaaaagaataaaaaaaatgttattttcattttaaaatttccttttttaggttccttaaccactgccccgaggac 885807  T
Q  144 atcggttaacaagaccct 161  Q
    | ||||||||| ||||||    
T  885808 accggttaacatgaccct 885825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 6108545 - 6108638
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaattt 108  Q
    ||||||| || || |||||| ||||| ||| |||||| ||| |||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  6108545 actggttaagaaaacaaatgtagtaa-tatggcattgaaacatgtgttgttaactcctcaaaaacataaaaagtattattttcattttaaaattt 6108638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 9799350 - 9799226
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaa-aattt 108  Q
    ||||||||||| |||| | |||||  ||||||||| |||||||||||||| ||||||||| | ||||  |||||||||||||  || | ||||| | |||    
T  9799350 gggcactggttaaggagttaaatgtggtaagtattacattggaacttgtgttgtcaactcttgaaaagtataaaaagtgttacctttattttaagacttt 9799251  T
Q  109 ccctttttagtttccttaatcagtg 133  Q
    |  |||||||||||||||| |||||    
T  9799250 caatttttagtttccttaaccagtg 9799226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 7222885 - 7222830
Alignment:
Q  71 tcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaa 127  Q
    ||||||||||||||||||||| ||| | ||||||||||  |||||||||||||||||    
T  7222885 tcaaaaacataaaaagtgttacttttattttaaaattt-tctttttagtttccttaa 7222830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 32286060 - 32286114
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttca 97  Q
    ||||||||||||||||||  |||||| |||||||  |||||||||| ||||||||    
T  32286060 ttgcattggaacttgtgcattcaacttctcaaaagtataaaaagtgatattttca 32286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 39609760 - 39609702
Alignment:
Q  37 taagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatttt 95  Q
    ||||||||| |||  |||||||| |||||||||||||||| |||||||||  |||||||    
T  39609760 taagtattgtattataacttgtgttgtcaactcctcaaaagcataaaaagaattatttt 39609702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 5493833 - 5493869
Alignment:
Q  118 gtttccttaatcagtgtcccgaaggcatcggttaaca 154  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  5493833 gtttccttaaccagtgccccgaaggcatcggttaaca 5493869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 34935184 - 34935132
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatttt 95  Q
    ||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  34935184 ttgcattggaacttgtgcattcaactcttcaaaaatttaaaaagtgatatttt 34935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 37720641 - 37720502
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  37720641 aggaatcaaatgtagtaagtattgcattggaacatgtgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttcctttttagttt 37720542  T
Q  122 ccttaatcagtgtcccgaaggcatcggttaacaagaccct 161  Q
    |||||| ||||| || |  |||||||||||||||||||||    
T  37720541 ccttaaccagtgccctgggggcatcggttaacaagaccct 37720502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 159
Target Start/End: Complemental strand, 28710485 - 28710341
Alignment:
Q  15 ctggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcccttt 114  Q
    |||||| |||||||||||| |||||||||| |||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||| || | |||    
T  28710485 ctggttaaggaatcaaatgtagtaagtattacattggaatttgtgctgctaactcctcaaaaacataaaaattgttattttcactttaaaactttctttt 28710386  T
Q  115 ttagtttccttaatcagtgtcccgaaggcatcggttaacaagacc 159  Q
    |||||||| |||| || |||||||| | || ||||||||| ||||    
T  28710385 ttagtttctttaaccaatgtcccgaggacaccggttaacatgacc 28710341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 15972230 - 15972128
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctt 113  Q
    ||||||| |||||||||||| |  ||||||| ||||| |||||||| |||||| |||||||||| ||||||||| |||||||||||||||||||||| ||    
T  15972230 actggttaaggaatcaaatgtataaagtattacattgaaacttgtgttgtcaaatcctcaaaaatataaaaagtattattttcactttaaaatttccttt 15972131  T
Q  114 ttt 116  Q
    |||    
T  15972130 ttt 15972128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 42469032 - 42468918
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||||| ||||||||||  |||| |||||||| |||| |||| | || ||||||||||||||| |||||| |||||||||| ||||||||||||    
T  42469032 aggaatcaaatgtagtaagtattaaattgaaacttgtgatgtccactctttaataacataaaaagtgttgttttcattttaaaatttacctttttagttt 42468933  T
Q  122 ccttaatcagtgtcc 136  Q
    |||||| | ||||||    
T  42468932 ccttaacccgtgtcc 42468918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 8022294 - 8022209
Alignment:
Q  24 gaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||||||||| |||||||| ||| |||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8022294 gaatcaaatgcagcaagtattgtattagaaggtgtgatgtcaactcctcaaaaacataaaaaatgttattttcactttaaaatttc 8022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 27916515 - 27916414
Alignment:
Q  24 gaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttcc 123  Q
    |||||||||  | ||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| || | |||||| |||||    
T  27916515 gaatcaaatataataagtattgtattggaatttgtgctgtcaactcctcaaaaacgtaaaatgtgttattttcactttaaaactttcgtttttaatttcc 27916416  T
Q  124 tt 125  Q
    ||    
T  27916415 tt 27916414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 47903981 - 47903891
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    |||||||| ||| |||||||| | |||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||||||||| |||||||    
T  47903981 cactggttaagggatcaaatgtaataagtattacattggaatttgtgttgtcaactcctcaaaaacat--aaagtgttattttcattttaaaa 47903891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 30487050 - 30486932
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||||||| |||| |||||||  ||||||||||||||| || |||||| |||||||  | ||||| ||||||| ||||| ||| | ||||||| |||    
T  30487050 gggcactggttaaggagtcaaatgtcgtaagtattgcattgaaatttgtgccgtcaacttttaaaaaatataaaaaatgttacttttattttaaaacttc 30486951  T
Q  110 c-ctttttagtttccttaa 127  Q
    |  ||||||||||||||||    
T  30486950 ctttttttagtttccttaa 30486932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 46777270 - 46777388
Alignment:
Q  9 agggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttc-actttaaaatt 107  Q
    |||||| ||||| || || ||||| |||||| | ||||||||||||||||||  |||||| ||||||| ||||||||||| ||||||| || | ||| ||    
T  46777270 agggcaatggttaagaaaacaaatacagtaa-tcttgcattggaacttgtgcattcaacttctcaaaagcataaaaagtgatattttcaacataaaactt 46777368  T
Q  108 tccctttttagtttccttaa 127  Q
    || |||||| ||||||||||    
T  46777369 tctctttttggtttccttaa 46777388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 19434549 - 19434499
Alignment:
Q  104 aatttccctttttagtttccttaatcagtgtcccgaaggcatcggttaaca 154  Q
    |||||||||||||| | ||||||||||||| |||| ||||| |||||||||    
T  19434549 aatttccctttttattatccttaatcagtgccccggaggcaccggttaaca 19434499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 33999632 - 33999579
Alignment:
Q  100 ttaaaatttccctttttagtttccttaatcagtgtcccgaaggcatcggttaac 153  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||  |||||||    
T  33999632 ttaaaatttctacttttagtttccttaaccagtgtcccgaaggcactggttaac 33999579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 19689605 - 19689645
Alignment:
Q  120 ttccttaatcagtgtcccgaaggcatcggttaacaagaccc 160  Q
    |||||||||||||||| || ||||| |||||||||||||||    
T  19689605 ttccttaatcagtgtctcggaggcaccggttaacaagaccc 19689645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 19940698 - 19940547
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||     
T  19940698 gggcactggttaaggaatcaaatgtagtaagtattgcattgaaacttatgctgtcaactcctcaaaagcataaaaagtgttattttcactttaaaacttt 19940599  T
Q  110 cctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccct 161  Q
    |||||||||||||||||| ||||| ||||  |||| ||||||||| ||||||    
T  19940598 cctttttagtttccttaaccagtgccccgggggcaccggttaacatgaccct 19940547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 6754195 - 6754061
Alignment:
Q  28 caaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatt-ttcactttaaaatttccctttttagtttcctta 126  Q
    |||||| ||||| |||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||| |||||||||||  ||||||| |||||||    
T  6754195 caaatgtagtaaatattgcattggaacttgtgtcgtcaactcctcaaaaacattaaaagtgttattcttcattttaaaatttcattttttaggttcctta 6754096  T
Q  127 atcagtgtcccgaaggcatcggttaacaagaccct 161  Q
    | ||||  |||| ||||||||||||||| ||||||    
T  6754095 accagtaccccggaggcatcggttaacatgaccct 6754061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 46289887 - 46289776
Alignment:
Q  24 gaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttcc 123  Q
    ||||||| || |||||||||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||  ||||||||||||     
T  46289887 gaatcaagtgtagtaagtattgcattgtaacttttgctgtcaacacttcaaaaacataaaaagtgttattttcactttaaaacttttctttttagtttct 46289788  T
Q  124 ttaatcagtgtc 135  Q
    |||| |||||||    
T  46289787 ttaaccagtgtc 46289776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 17063841 - 17063960
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcc 110  Q
    ||||||| || |||||||||||| || ||||||||||||| ||  |||| ||| ||||||| ||||||||||||| ||||||||| |||||||||||||     
T  17063841 ggcactgattaaggaatcaaatgtagaaagtattgcattgaaatgtgtgttgttaactcctaaaaaacataaaaattgttatttttactttaaaatttct 17063940  T
Q  111 ctttttagtttccttaatca 130  Q
     |||||||||||||||||||    
T  17063941 ttttttagtttccttaatca 17063960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 4941290 - 4941171
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctt 113  Q
    ||||||| ||||| | |||| ||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||| | |||||||||||  ||    
T  4941290 actggttgaggaacctaatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaatttctttt 4941191  T
Q  114 tttagtttccttaatcagtg 133  Q
    ||||  || |||||||||||    
T  4941190 tttaagtttcttaatcagtg 4941171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 1408596 - 1408714
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa-ttt 108  Q
    ||||||||||| || | | ||||| ||||| | || |||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||| |||    
T  1408596 gggcactggttaagaatttaaatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaacttt 1408695  T
Q  109 ccctttttagtttccttaa 127  Q
    |  ||||||||||||||||    
T  1408696 ctttttttagtttccttaa 1408714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 34663092 - 34663216
Alignment:
Q  15 ctggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcccttt 114  Q
    |||||| |||| |||||||  |||||||||| |||||||||||| |||||||||  ||||||  ||||||||||||| ||||| ||||||| || | |||    
T  34663092 ctggttaaggagtcaaatgtggtaagtattgtattggaacttgtactgtcaacttttcaaaagtataaaaagtgttactttcattttaaaacttactttt 34663191  T
Q  115 -ttagtttccttaatcagtgtcccg 138  Q
     |||||||||||||  |||||||||    
T  34663192 attagtttccttaacgagtgtcccg 34663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 45485139 - 45484989
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||| ||| || || |||||  |||||||||||||||| || ||||| |||||||| || |||| ||||||| |||||||||| | |||||||||||    
T  45485139 gggcactagttaagaaaacaaatatagtaagtattgcattgaaatttgtgttgtcaacttctaaaaagcataaaatgtgttatttttattttaaaatttc 45485040  T
Q  110 -cctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccc 160  Q
       ||||||| |||||||| ||||| |||||| ||| ||||||||| |||||    
T  45485039 ttttttttaggttccttaaccagtgccccgaa-gcaccggttaacatgaccc 45484989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 4635828 - 4635751
Alignment:
Q  26 atcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaa 103  Q
    |||||||  |||||||||| ||||||||  | |||||||||||||||| || |||||||| |||||||||||||||||    
T  4635828 atcaaatatagtaagtattacattggaaaatttgctgtcaactcctcataagcataaaaaatgttattttcactttaa 4635751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 42514323 - 42514223
Alignment:
Q  29 aaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacata--aaaagtgttattttcactttaaaatttccctttttagtttcctta 126  Q
    ||||| |||||||||||||| | || ||||| |||||||||||||||||||||  |||| |||| |||| | |||||||||| | ||||||| ||| |||    
T  42514323 aaatgtagtaagtattgcatagaaatttgtgttgtcaactcctcaaaaacataaaaaaaatgttttttttattttaaaattttcttttttaggttcttta 42514224  T
Q  127 a 127  Q
    |    
T  42514223 a 42514223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 16589232 - 16589135
Alignment:
Q  12 gcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctca-aaaacataaaaagtgttattttcactttaaaattt 108  Q
    ||||||||| || || |||||| || | |||||| |||| ||||| || | |||||| |||| |||||||||||| ||||||||||| ||||||||||    
T  16589232 gcactggttaagaaagcaaatgtagcaggtattgtattgaaacttatgttttcaactgctcagaaaacataaaaaatgttattttcattttaaaattt 16589135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 43456658 - 43456763
Alignment:
Q  35 agtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaa-gtgttattttcacttta-aaatttccctttttagtttccttaatcagt 132  Q
    |||||||||| ||||| || |||   |||||| |||||||||||||||||| ||||||||||||||||| || ||||  |||||||||| | |||  |||    
T  43456658 agtaagtattacattgaaatttgcattgtcaattcctcaaaaacataaaaatgtgttattttcactttataactttctttttttagttttcctaactagt 43456757  T
Q  133 gtcccg 138  Q
    ||||||    
T  43456758 gtcccg 43456763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 48611802 - 48611678
Alignment:
Q  37 taagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatt-tccctttttagtttccttaatcagtgtc 135  Q
    |||||| | ||||| |||||||| ||| ||||  ||||||  ||||||||||||| ||| | ||||||| | ||  |||||||||||||||| ||||| |    
T  48611802 taagtactacattgcaacttgtgttgttaacttttcaaaagtataaaaagtgttacttttattttaaaactatctttttttagtttccttaaccagtgcc 48611703  T
Q  136 ccgaaggcatcggttaacaagaccc 160  Q
    ||| || || ||||||||| |||||    
T  48611702 ccgtagacaccggttaacatgaccc 48611678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 32503014 - 32503104
Alignment:
Q  46 cattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa-tttccctttttagtttccttaatcagtgtc 135  Q
    |||||||| |||||||||||| |  | ||||| ||||||||| ||| ||| | ||||||| ||||  |||||||||| |||||||||||||    
T  32503014 cattggaatttgtgctgtcaatttttaaaaaatataaaaagtattacttttattttaaaattttctttttttagttttcttaatcagtgtc 32503104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 3430590 - 3430642
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatttt 95  Q
    ||||||||||||||||||  |||||| |||||||  |||||||||| ||||||    
T  3430590 ttgcattggaacttgtgcattcaacttctcaaaagtataaaaagtgatatttt 3430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 36545277 - 36545122
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcc 110  Q
    |||||||||| | ||| |||||| ||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  36545277 ggcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaattttc 36545178  T
Q  111 ctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccctatttt 166  Q
    |||||||||||| |||| ||||| ||||  |||| |||||||||||||||| ||||    
T  36545177 ctttttagtttctttaaccagtgccccgggggcaccggttaacaagaccctttttt 36545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 36563037 - 36563192
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcc 110  Q
    |||||||||| | ||| |||||| ||||||||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |    
T  36563037 ggcactggttaacgaaacaaatgtagtaagtattgtattgtaacttgtgatgtcaactcctcaaaagcataaaaagtgttattttcactttaaaactttc 36563136  T
Q  111 ctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccctatttt 166  Q
    |||||||||||| |||| ||||| ||||  |||| |||||||||||||||| ||||    
T  36563137 ctttttagtttctttaaccagtgccccgggggcaccggttaacaagaccctttttt 36563192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 50175346 - 50175449
Alignment:
Q  23 ggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttc 122  Q
    ||||||||||  || |||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  50175346 ggaatcaaatatagaaagtattgcattggaatttgtgttgtcaactcctaaaaaacataaaaattgttatttttactttaaaatttccctttttagtttc 50175445  T
Q  123 ctta 126  Q
    ||||    
T  50175446 ctta 50175449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 25938587 - 25938671
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaa 127  Q
    ||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  25938587 ttgcattcgaacttgtgttgtcaattcctcaaaagcataaaaagtgttattttcactttaaaattttcctttttagttttcttaa 25938671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 29247289 - 29247403
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||| ||||| |||||| ||||| || || |||| |||||||||||||| | ||||||||||||||  ||||||||||||||||| ||||||||||||     
T  29247289 gggcaatggttaaggaattaaatgtagaaaatattacattggaacttgtgttatcaactcctcaaaagtataaaaagtgttattttaactttaaaattta 29247388  T
Q  110 cctttttagtttcct 124  Q
    | |||||||||||||    
T  29247389 cttttttagtttcct 29247403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 42388717 - 42388804
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttca 97  Q
    ||||||||||| || | ||||||| ||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  42388717 gggcactggttaagaagtcaaatgtagtaagtattgtattggaatttgtgctgtcaacttttcaaaaacataaaaagtgttattttca 42388804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 8936180 - 8936056
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||||||| |||| | |||||  | ||||||| ||||| |||||||||||||||| | | |||| |||||||||||||| ||| | ||||||| |||    
T  8936180 gggcactggttaaggagttaaatgtggcaagtattacattgaaacttgtgctgtcaacccttgaaaagcataaaaagtgttacttttattttaaaacttc 8936081  T
Q  110 ccttttt-agtttccttaatcagtg 133  Q
    | ||||| ||||||||||| |||||    
T  8936080 cttttttaagtttccttaaccagtg 8936056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 26841396 - 26841258
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctt 113  Q
    ||||||| |||||||||||| |  |||| || ||||| || ||| | ||||||||| | |||| |||||||||||||||||| ||||||||| ||  |||    
T  26841396 actggttaaggaatcaaatgtaa-aagttttacattgaaatttgggttgtcaactctt-aaaatcataaaaagtgttatttttactttaaaaattatctt 26841299  T
Q  114 tttagtttccttaatcagtgtcccgaaggcatcggttaaca 154  Q
    |||| |||  |||||||||| |||||| ||| |||||||||    
T  26841298 tttaatttatttaatcagtgccccgaaagcaccggttaaca 26841258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 46930115 - 46930020
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctc-aaaaacataaaaagtgttattttcactttaaaattt 108  Q
    |||||||| |||| ||||||| ||||| |||| |||||||| || |||||| |||| ||| ||||||||||||| ||||||||| ||||||||||||    
T  46930115 cactggttaagga-tcaaatgtagtaaatattacattggaatttatgctgttaacttctccaaaaacataaaaaatgttatttttactttaaaattt 46930020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 42411032 - 42411098
Alignment:
Q  29 aaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatttt 95  Q
    ||||| ||||||||||||||||||||||| | |||||| |  ||||||||||||||| |||||||||    
T  42411032 aaatgtagtaagtattgcattggaacttgcgttgtcaagttttcaaaaacataaaaaatgttatttt 42411098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 1294989 - 1294911
Alignment:
Q  27 tcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    ||||||| | |||||||| ||||| || ||||||||||| ||| ||| ||||||||||| ||||| ||||| |||||||    
T  1294989 tcaaatgtaataagtattacattgaaatttgtgctgtcagctcttcataaacataaaaaatgttactttcattttaaaa 1294911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 26141769 - 26141684
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttc-actttaaaatttccctttttagtttccttaa 127  Q
    ||||||||||||||||||  |||||||||||||||  |||||| || ||||||| |||||||| ||||  |||||  |||||||||    
T  26141769 ttgcattggaacttgtgcattcaactcctcaaaaatctaaaaaatggtattttcaactttaaactttctttttttgatttccttaa 26141684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 43159833 - 43159982
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcc 110  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||     
T  43159833 ggcactggttaagaaaacaaatgtagtaagtattgcattggaacttgtgttgtcaactcctcaaaaacttaaaaagtgttattttcattttaaaatttct 43159932  T
Q  111 ctttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccc 160  Q
     ||||||| ||| |||| || || |||| || || ||||||||| |||||    
T  43159933 ttttttaggttctttaaccaatgccccggagacaccggttaacatgaccc 43159982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 38509908 - 38510038
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccct 112  Q
    |||| ||| |||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||  || |||||||||||||| | |||||||||||  |    
T  38509908 cacttgttaaggaatcaaatgtaataaatattgcattggaacttgtgttgtcaactcctcaaaagtatgaaaagtgttatttttattttaaaatttcttt 38510007  T
Q  113 ttttagtttccttaatcagtgtcccgaaggca 144  Q
    |||||| ||||||| ||| || ||||||||||    
T  38510008 ttttaggttccttagtcaatg-cccgaaggca 38510038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 3427858 - 3427940
Alignment:
Q  25 aatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatt 107  Q
    ||||||||| ||||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  3427858 aatcaaatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaatt 3427940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 27756450 - 27756542
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    |||||||| |||||||||||| |||||||||| ||||| || ||||| ||||||||| |||||| |||||||||||||||||||| |||||||    
T  27756450 cactggttaaggaatcaaatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 21858917 - 21858817
Alignment:
Q  37 taagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaag--tgttattttcactttaaaatttccctttttagtttccttaatcagtgt 134  Q
    |||||||||| | | |||||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||| ||||||| |||||||| ||||||    
T  21858917 taagtattgcctagaaacttgtgttgtcaactcctcaaaaacataaaaaaaatgttattttcattttaaaatttccttttttagattccttaaccagtgt 21858818  T
Q  135 c 135  Q
    |    
T  21858817 c 21858817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 21914780 - 21914680
Alignment:
Q  37 taagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaag--tgttattttcactttaaaatttccctttttagtttccttaatcagtgt 134  Q
    |||||||||| | | |||||||| |||||||||||||||||||||||||   ||||||||||| |||||||||||| ||||||| |||||||| ||||||    
T  21914780 taagtattgcctagaaacttgtgttgtcaactcctcaaaaacataaaaaaaatgttattttcattttaaaatttccttttttagattccttaaccagtgt 21914681  T
Q  135 c 135  Q
    |    
T  21914680 c 21914680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 4687460 - 4687312
Alignment:
Q  12 gcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccc 111  Q
    ||||||||| |||||| ||||  | |||| | || ||||||| ||||||| |||||| ||||||| |||||||||||||||||| ||||||||| ||       
T  4687460 gcactggttaaggaattaaatataataagcaatgtattggaatttgtgctatcaacttctcaaaagcataaaaagtgttatttttactttaaaactttgt 4687361  T
Q  112 tttttagtttccttaatcagtgtcccgaaggcatcggttaacaagaccc 160  Q
    |||||||||| ||||| ||||||||   || || |||||||||||||||    
T  4687360 tttttagttttcttaaccagtgtccgagagacaccggttaacaagaccc 4687312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 53482376 - 53482508
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||||  |||||||||||||||||||| |||| |  |||||| | |||| |||||||| ||||||||| |||||||||  | |||||||| |||    
T  53482376 aggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaaccttcctttttaattt 53482475  T
Q  122 ccttaatcagtgtcccgaaggcatcggttaaca 154  Q
    |||||| |||||||||  | ||| |||||||||    
T  53482476 ccttaaccagtgtcccagaagcaccggttaaca 53482508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 19328815 - 19328949
Alignment:
Q  27 tcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc-cctttttagtttcctt 125  Q
    |||||||  ||||||||| |||||||||||||||| ||||||| ||||||  ||||||||||||| ||||| ||||||| |||   ||||||||||||||    
T  19328815 tcaaatgtggtaagtattacattggaacttgtgctatcaactcttcaaaagtataaaaagtgttactttcattttaaaacttcatttttttagtttcctt 19328914  T
Q  126 aatcagtgtcccgaaggcatcggttaacaagaccc 160  Q
    || ||||| |||   |||| ||||||||| |||||    
T  19328915 aaccagtgcccccggggcaccggttaacatgaccc 19328949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 20032911 - 20033018
Alignment:
Q  28 caaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatt-ttcactttaaaatttccctttttagtttcctta 126  Q
    |||||| | ||| |||| |||||||||||||  ||||||||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| ||| |||    
T  20032911 caaatgtaataaatattacattggaacttgtattgtcaactcttcaaaaacataaaaagtgttattcttcattttaaaattttcttttttaggttcttta 20033010  T
Q  127 atcagtgt 134  Q
    | ||||||    
T  20033011 accagtgt 20033018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 37193577 - 37193659
Alignment:
Q  24 gaatcaaatgcagtaagtattgcattggaa-cttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    |||||||||| ||||| |||||||||| || |||| || ||||||||||||||  ||||||||||||||||||||||||||||    
T  37193577 gaatcaaatgtagtaaatattgcattgaaaacttgagcggtcaactcctcaaatgcataaaaagtgttattttcactttaaaa 37193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 2653032 - 2652918
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa-tttccct 112  Q
    ||||||| ||| || ||||| ||||||||||  |||| ||| |||| | ||||||| ||||||||||||||||| | ||||||| ||||||| ||||  |    
T  2653032 actggttaaggcattaaatgtagtaagtattctattgaaacatgtgttttcaactcttcaaaaacataaaaagtatcattttcattttaaaattttcttt 2652933  T
Q  113 ttttagtttccttaa 127  Q
    |||||||||||||||    
T  2652932 ttttagtttccttaa 2652918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 46871305 - 46871385
Alignment:
Q  41 tattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||| ||||| |||||||| |||||||||||| |||| ||||||||||||| |||||| ||||| ||| | ||||||||||    
T  46871305 tattacattgaaacttgtgttgtcaactcctcgaaaatataaaaagtgttactttcaccttaaagttttcttttttagttt 46871385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 3913646 - 3913734
Alignment:
Q  27 tcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttt 115  Q
    |||||||  ||||||||| | |||||||||||| ||| ||||| ||||||  ||||||||||||| ||||| ||||||| |||| ||||    
T  3913646 tcaaatgtggtaagtattacgttggaacttgtgttgttaactcttcaaaagtataaaaagtgttactttcattttaaaaattccttttt 3913734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 25474707 - 25474654
Alignment:
Q  55 ttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaattt 108  Q
    ||||| ||||||||| |||||| |||||||| ||||||||||| ||||||||||    
T  25474707 ttgtgttgtcaactcttcaaaagcataaaaaatgttattttcattttaaaattt 25474654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 55997820 - 55997772
Alignment:
Q  37 taagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaa 85  Q
    ||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  55997820 taagtattgtattggaacttatgctgtcaactcttcaaaaatataaaaa 55997772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 10110132 - 10110179
Alignment:
Q  104 aatttccctttttagtttccttaatcagtgtcccgaaggcatcggtta 151  Q
    |||||||||||||| | |||||||||||||||||| ||||| ||||||    
T  10110132 aatttccctttttattatccttaatcagtgtcccggaggcaccggtta 10110179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 24355879 - 24355768
Alignment:
Q  16 tggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttc-actttaaaatttcccttt 114  Q
    ||||| ||||| |||||  ||||| ||| ||||||||||||||||  ||||||||||||||   |||||| |  ||||||| |||| ||| |||| ||||    
T  24355879 tggttaaggaagcaaatatagtaa-tatcgcattggaacttgtgcattcaactcctcaaaagtctaaaaaattgtattttcaacttaaaactttctcttt 24355781  T
Q  115 ttagtttccttaa 127  Q
    || ||||||||||    
T  24355780 ttggtttccttaa 24355768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 6983279 - 6983157
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||||| ||| |||||||||||  || ||||||| |||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||    
T  6983279 gggcactagttaaggaatcaaatatagaaagtattacattggaacttgtggtgtcaactcctaaaaagcataaaaagtgttattttcacttt-aaatttc 6983181  T
Q  110 cctttttagtttccttaatcagtg 133  Q
    | |||||||||||||||| |||||    
T  6983180 cttttttagtttccttaaccagtg 6983157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 27322727 - 27322856
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcc 110  Q
    |||||||||| |||| |||||||  |||||||||||||||||||||||||||||||||| | |||| |||||||||| ||| ||| | |||  || ||||    
T  27322727 ggcactggttaaggagtcaaatgtggtaagtattgcattggaacttgtgctgtcaactcttgaaaagcataaaaagtattacttttattttcgaacttcc 27322826  T
Q  111 -ctttttagtttccttaatcagtgtcccga 139  Q
      |||||||||||||||| ||||| |||||    
T  27322827 tttttttagtttccttaaccagtgccccga 27322856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 25627379 - 25627487
Alignment:
Q  11 ggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatt-ttcactttaaaatttc 109  Q
    |||||| ||| || || |||||| ||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||| || | || ||||||||    
T  25627379 ggcactagttaagaaagcaaatgtagtaagtattttattgaaacttgtgttgtcaactcctcaaaaacataaaaagtgttattcttaatttcaaaatttc 25627478  T
Q  110 cctttttag 118  Q
    | |||||||    
T  25627479 cttttttag 25627487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 4614360 - 4614255
Alignment:
Q  28 caaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaa 127  Q
    |||||| |||||||||| |||| ||| || || ||||||||| |||||||||| ||||||| |||||| | |||||||||||  ||||||| ||||||||    
T  4614360 caaatgtagtaagtattacattagaatttatgttgtcaactcatcaaaaacatgaaaagtgctatttttattttaaaatttctttttttaggttccttaa 4614261  T
Q  128 tcagtg 133  Q
     |||||    
T  4614260 ccagtg 4614255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 33085441 - 33085340
Alignment:
Q  27 tcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttcctta 126  Q
    ||||||| ||||||||||||| || |||||||| |||||||||   ||||| |||||| |||||||||||||||||||||||   |||||||||||||||    
T  33085441 tcaaatgtagtaagtattgcaatgaaacttgtgatgtcaactc---aaaaatataaaa-gtgttattttcactttaaaattt-attttttagtttcctta 33085347  T
Q  127 atcagtg 133  Q
    | |||||    
T  33085346 accagtg 33085340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 3037402 - 3037504
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||| | || || |||| |||||||| ||||| ||||||||||| ||||  ||||||||||||| ||| | |||||||||| | ||||||||||    
T  3037402 aggaatcaaacgtagaaattattacattggaatttgtgttgtcaactccttaaaagtataaaaagtgttactttgattttaaaattttcttttttagttt 3037501  T
Q  122 cct 124  Q
    |||    
T  3037502 cct 3037504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 43077263 - 43077177
Alignment:
Q  47 attggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaatcagtg 133  Q
    ||||||| ||||||| |||||||||||||| |||||||  ||||||||||| |||||||||| | ||| |||||| ||||| |||||    
T  43077263 attggaatttgtgctatcaactcctcaaaagcataaaatatgttattttcaatttaaaattttcttttatagttttcttaaccagtg 43077177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 16634422 - 16634541
Alignment:
Q  36 gtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcccttt-ttagtttccttaatcagtgt 134  Q
    ||||||||| |||||||| ||||||||||||||  |||||| |||||||| ||||  ||  | ||||||| |||  ||| |||||||||||||||||||     
T  16634422 gtaagtattacattggaatttgtgctgtcaacttttcaaaagcataaaaaatgttgcttctattttaaaacttcattttattagtttccttaatcagtgc 16634521  T
Q  135 cccgaaggcatcggttaaca 154  Q
     ||| ||||| |||||||||    
T  16634522 tccggaggcaccggttaaca 16634541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 38318804 - 38318879
Alignment:
Q  60 ctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaatcagtgtc 135  Q
    |||| |||||||||||||||||| || |||| ||||||||||||||||| | |||||| ||| |||||| ||||||    
T  38318804 ctgttaactcctcaaaaacataacaattgttgttttcactttaaaattttcttttttatttttcttaattagtgtc 38318879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 1991984 - 1991934
Alignment:
Q  35 agtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaa 85  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||||||    
T  1991984 agtaagtattacattagaacttgtgttgtcaactcctcaaaaacataaaaa 1991934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 24137984 - 24138067
Alignment:
Q  8 cagggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgtta 91  Q
    |||| ||||| || |||||||||||||||||||||||| |||| || ||||| |||||||| || |||||| || |||| ||||    
T  24137984 caggacactgattaaggaatcaaatgcagtaagtattgtattgaaatttgtgttgtcaacttcttaaaaacttagaaagagtta 24138067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 9116492 - 9116379
Alignment:
Q  21 taggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc-cctttttagt 119  Q
    ||||| |||||||  |||| ||||||||||||||||||||||||||||  | ||||  ||| ||||||||| ||| | ||||||| |||   ||||||||    
T  9116492 taggagtcaaatgtggtaaatattgcattggaacttgtgctgtcaacttttgaaaagtatacaaagtgttacttttattttaaaacttcatttttttagt 9116393  T
Q  120 ttccttaatcagtg 133  Q
    || ||||| |||||    
T  9116392 tttcttaaccagtg 9116379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 9521159 - 9521069
Alignment:
Q  15 ctggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    |||||| |||| |||||||   |||||||| ||||| |||||||||||||||||  | ||||  ||||||||||||| ||| | |||||||    
T  9521159 ctggttaaggagtcaaatgtgataagtattacattgaaacttgtgctgtcaacttttgaaaagtataaaaagtgttacttttattttaaaa 9521069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 34353289 - 34353354
Alignment:
Q  43 ttgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaattt 108  Q
    |||||||| |||||||||  ||||||||||||||   ||||||||| ||||||||  |||||||||    
T  34353289 ttgcattgaaacttgtgcattcaactcctcaaaagtttaaaaagtggtattttcaacttaaaattt 34353354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 6084 - 6202
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa-ttt 108  Q
    ||||||||||| |||| ||||||| ||||||||||||||||||| || |||||||||||  ||||||||||||||||||||| ||||| ||||||| |||    
T  6084 gggcactggttaaggagtcaaatgtagtaagtattgcattggaatttatgctgtcaacttttcaaaaacataaaaagtgttactttcattttaaaacttt 6183  T
Q  109 ccctttttagtttccttaa 127  Q
    |  ||||||||||||||||    
T  6184 ctttttttagtttccttaa 6202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 36603778 - 36603677
Alignment:
Q  27 tcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa-tttccctttttagtttcctt 125  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| | ||||| ||||||| ||||  ||||||| ||||||    
T  36603778 tcaaatgcagtaagtattgcattggaacttgtgttgtcaactcttcaaaaacataaaaagtgtcactttcattttaaaactttctttttttaggttcctt 36603679  T
Q  126 aa 127  Q
    ||    
T  36603678 aa 36603677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 36974169 - 36974065
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccct 112  Q
    |||||||| || || |||||| ||||| ||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||| |    
T  36974169 cactggttaagaaaacaaatgtagtaaatattgcattagaacttgtgttgtcaactcttcaaaaacataaaatgtgttattttcattttaaaatttcctt 36974070  T
Q  113 tttta 117  Q
    |||||    
T  36974069 tttta 36974065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 21067597 - 21067743
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctt 113  Q
    ||||||| |||| ||||||| |||||||||| ||||| |||||||| ||||| ||| |||||| ||||||||||  || ||||| ||||||| |||| ||    
T  21067597 actggttaaggagtcaaatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttccttt 21067696  T
Q  114 ttt-agtttccttaatcagtgtcccgaaggcatcggttaacaagacc 159  Q
    ||| ||||||||||| |||||  ||| ||||||||||||||| ||||    
T  21067697 tttgagtttccttaaccagtgcaccggaggcatcggttaacatgacc 21067743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 24233156 - 24233282
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttca-ctttaaaatttccc 111  Q
    |||| ||| |||| ||||||| | ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||| ||| ||| || |      
T  24233156 cactagttaaggagtcaaatgtaataagtattgcattggaacttgtgctgtcaacttttcaaaaatataaaaagtgttactttcatcttcaaacttcctt 24233255  T
Q  112 tttttagtttccttaatcagtgtcccg 138  Q
    |||||||||||||||| ||||||||||    
T  24233256 tttttagtttccttaaccagtgtcccg 24233282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 24434098 - 24434218
Alignment:
Q  14 actggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacat--aaaaagtgttattttcactttaaaatttccc 111  Q
    ||||||| | |||||||||| |||||| ||||||||| |||||||| ||||||||||| |||  |||  ||||| ||||||||| |||||||||  | ||    
T  24434098 actggttaaagaatcaaatgtagtaagcattgcattgaaacttgtgttgtcaactcctaaaacgcataaaaaaaatgttatttttactttaaaacattcc 24434197  T
Q  112 tttttagtttccttaatcagt 132  Q
    |||||| ||||||||| ||||    
T  24434198 tttttaatttccttaaccagt 24434218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 39 - 127
Target Start/End: Complemental strand, 39753387 - 39753298
Alignment:
Q  39 agtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttcccttt-ttagtttccttaa 127  Q
    |||||| ||||| |||||||||||||||||| |||||| |||||||||| ||| ||||| ||||||| |||  ||| |||||||||||||    
T  39753387 agtattacattgaaacttgtgctgtcaactcttcaaaagcataaaaagtattactttcattttaaaacttcattttcttagtttccttaa 39753298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 1179953 - 1180045
Alignment:
Q  38 aagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaatca 130  Q
    ||||||| ||||| ||||| || |||||||| || ||||||||||||||||||||||| | |||||||||| | ||||||  ||| |||||||    
T  1179953 aagtattacattgaaacttatgttgtcaacttctaaaaaacataaaaagtgttatttttattttaaaattttcttttttaagttctttaatca 1180045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 28988488 - 28988360
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaa--gtgttattttcactttaaaatttcc 110  Q
    |||||||| |||| |||||||  |||| |||| ||||| || |||||  |||||||  |||||| ||||||||  |||||| ||||| ||||||||||||    
T  28988488 cactggttaaggagtcaaatgtggtaattattacattgaaatttgtgtcgtcaacttttcaaaagcataaaaaaagtgttactttcattttaaaatttcc 28988389  T
Q  111 -ctttttagtttccttaatcagtgtcccg 138  Q
      |||||||||||||||| ||||| ||||    
T  28988388 tttttttagtttccttaaccagtgccccg 28988360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 19187129 - 19187212
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaa 105  Q
    |||| ||||| ||| ||||| || ||||| || ||||| ||||||||| |||||| ||||||||||||| |||||| |||||||    
T  19187129 aggattcaaaagcaataagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaa 19187212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 12384012 - 12383923
Alignment:
Q  28 caaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatt-ttcactttaaaatttcccttttta 117  Q
    |||||| ||||||||||| |||| || ||||| |||||||||||||||| ||| |||||||| ||| | || |||||||||||| ||||||    
T  12384012 caaatgtagtaagtattgaattgaaatttgtgttgtcaactcctcaaaagcat-aaaagtgtaattctacattttaaaatttcctttttta 12383923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 38282519 - 38282573
Alignment:
Q  55 ttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttc 109  Q
    ||||| ||||||||| | ||||| ||||||||||||||||||| |||||||||||    
T  38282519 ttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaatttc 38282573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 38353709 - 38353626
Alignment:
Q  45 gcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttc-actttaaaatttccctttttagtttccttaa 127  Q
    ||||||||||||||||  ||||||||||||||   ||||||||| ||||||| |||| ||| ||||  |||||| |||||||||    
T  38353709 gcattggaacttgtgcattcaactcctcaaaagtctaaaaagtggtattttcaacttaaaactttctttttttaatttccttaa 38353626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 14122929 - 14123002
Alignment:
Q  61 tgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccct-ttttagtttccttaatcagtg 133  Q
    ||||||||  |||||| |||| ||||||||| ||||| ||||||| |||| | ||||||||||||||| |||||    
T  14122929 tgtcaactattcaaaagcatataaagtgttactttcattttaaaacttccttcttttagtttccttaaccagtg 14123002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 6677065 - 6677137
Alignment:
Q  13 cactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaa 85  Q
    |||||||| |||||||||||| ||||||| ||  |||| || ||||| | ||||||| |||||| ||||||||    
T  6677065 cactggttaaggaatcaaatgtagtaagttttatattgaaatttgtgttctcaactcttcaaaagcataaaaa 6677137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 106553 - 106465
Alignment:
Q  47 attggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagtttccttaatcagtgtc 135  Q
    ||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||| || | |||||||||||||||| |||||||    
T  106553 attggaacttgtgctatcaacttctcgaaagcataaaaagtgttattttcactttaaaactttcttttttagtttccttaaccagtgtc 106465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 14206 - 14324
Alignment:
Q  10 gggcactggtttaggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttatt-ttcactttaaaattt 108  Q
    ||||||||||| || || |||||| ||||| ||||||||| ||||||||| |||||||||||||||| |||||||||||||||| || | ||||||||||    
T  14206 gggcactggttaagaaagcaaatgtagtaaatattgcattagaacttgtgttgtcaactcctcaaaagcataaaaagtgttattctttattttaaaattt 14305  T
Q  109 ccctttttagtttccttaa 127  Q
    |  ||||||  ||||||||    
T  14306 cgttttttatgttccttaa 14324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 1150 - 1282
Alignment:
Q  22 aggaatcaaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaaatttccctttttagttt 121  Q
    |||||||||||  |||||||||||||||||||| |||| |  |||||| | |||| |||||||| ||||||||| |||||||||  | |||||||| |||    
T  1150 aggaatcaaatttagtaagtattgcattggaacgtgtgatagcaactcattaaaagcataaaaaatgttatttttactttaaaaccttcctttttaattt 1249  T
Q  122 ccttaatcagtgtcccgaaggcatcggttaaca 154  Q
    |||||| |||||||||  | ||| |||||||||    
T  1250 ccttaaccagtgtcccagaagcaccggttaaca 1282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 1280 - 1379
Alignment:
Q  28 caaatgcagtaagtattgcattggaacttgtgctgtcaactcctcaaaaacataaaaagtgttattttcacttt-aaaatttccctttttagtttcctta 126  Q
    |||||| ||||||||||||||||| ||||||| ||||||||| |||||| |||||||| ||||||||||| ||| ||||||||  ||||||| |||||||    
T  1280 caaatgtagtaagtattgcattggtacttgtgttgtcaactcatcaaaagcataaaaaatgttattttcattttaaaaatttctttttttaggttcctta 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 6253521 - 6253570
Alignment:
Q  55 ttgtgctgtcaactcctcaaaaacataaaaagtgttattttcactttaaa 104  Q
    |||||||||||||| |||||||  ||||||||| ||||||||||||||||    
T  6253521 ttgtgctgtcaactactcaaaagaataaaaagtattattttcactttaaa 6253570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University