View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1883-Insertion-27 (Length: 310)
Name: NF1883-Insertion-27
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1883-Insertion-27 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 307
Target Start/End: Original strand, 37887799 - 37888097
Alignment:
| Q |
7 |
atagagctacatctcccttgcctcctgttaaagccaggatgatcaagagaagaaagtgataactgatgaatgatgtcttaacnnnnnnnnnnnnnnnnnn |
106 |
Q |
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| T |
37887799 |
atagagctacatctcctttgcctcctgttaaagccaggatgatcaagagaagaaaatgataaccgatgaatgatatcttaacatatatatgtatatat-- |
37887896 |
T |
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| Q |
107 |
tgttctttgctgaatcgtgttttaatagattagttactaatttcaatgtttgtaacttttgatgtgtggattatgtatatattaatatttcactttccta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37887897 |
tgttctttgctgaatcgtgttttaatagattagttactaatttcaatgtttgtaacttttgatgtgtggattatgtatatattaatatttcactttccta |
37887996 |
T |
|
| Q |
207 |
tactgcatatatttgttttggttaaataatgtgaagatttagatgtgattagaacccaattgaaatttgatcaaatctttgcatcttttgttaattttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37887997 |
tactgcatatatttgttttggttaaataatgtgaagatttagatgtgattagaacccaattgaaatttgatcaaatctttgcatcttttgttaattttat |
37888096 |
T |
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