View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1883-Insertion-8 (Length: 895)

Name: NF1883-Insertion-8
Description: NF1883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1883-Insertion-8
NF1883-Insertion-8
[»] chr7 (22 HSPs)
chr7 (8-482)||(6350042-6350514)
chr7 (627-895)||(6350621-6350893)
chr7 (351-496)||(33387490-33387637)
chr7 (358-488)||(7003524-7003653)
chr7 (358-488)||(7049395-7049524)
chr7 (351-427)||(13072043-13072119)
chr7 (351-447)||(21420055-21420151)
chr7 (351-470)||(32198872-32198991)
chr7 (420-484)||(36659070-36659134)
chr7 (411-487)||(44832729-44832805)
chr7 (439-487)||(49010640-49010688)
chr7 (404-471)||(23581250-23581317)
chr7 (404-486)||(23090231-23090313)
chr7 (405-487)||(28836988-28837070)
chr7 (351-459)||(8722525-8722633)
chr7 (429-488)||(8866941-8867000)
chr7 (404-478)||(31251965-31252039)
chr7 (394-440)||(48614137-48614183)
chr7 (404-453)||(553569-553618)
chr7 (349-426)||(8867640-8867717)
chr7 (406-487)||(33386831-33386911)
chr7 (349-426)||(33685745-33685822)
[»] chr2 (16 HSPs)
chr2 (708-813)||(35081986-35082093)
chr2 (837-895)||(35084185-35084243)
chr2 (351-471)||(21556283-21556403)
chr2 (386-469)||(18829074-18829157)
chr2 (404-487)||(37621905-37621988)
chr2 (382-488)||(15441489-15441595)
chr2 (351-453)||(18829830-18829932)
chr2 (351-496)||(17373669-17373814)
chr2 (428-488)||(7071742-7071802)
chr2 (420-488)||(17444236-17444303)
chr2 (420-488)||(26161903-26161970)
chr2 (355-426)||(26238130-26238201)
chr2 (411-470)||(26591296-26591355)
chr2 (446-488)||(12756065-12756107)
chr2 (351-488)||(15512385-15512522)
chr2 (381-454)||(40654140-40654213)
[»] chr5 (8 HSPs)
chr5 (351-488)||(23034862-23034998)
chr5 (351-488)||(30297107-30297242)
chr5 (420-488)||(15959146-15959214)
chr5 (410-485)||(8788726-8788801)
chr5 (412-470)||(20368293-20368351)
chr5 (351-487)||(8788018-8788156)
chr5 (429-488)||(12278065-12278124)
chr5 (412-471)||(20362932-20362991)
[»] chr4 (24 HSPs)
chr4 (349-471)||(20628655-20628777)
chr4 (351-487)||(20635493-20635629)
chr4 (351-473)||(2941386-2941508)
chr4 (351-473)||(3222232-3222354)
chr4 (373-471)||(5290651-5290749)
chr4 (410-472)||(33846480-33846542)
chr4 (358-488)||(26546456-26546588)
chr4 (420-488)||(13390648-13390716)
chr4 (358-454)||(31854155-31854250)
chr4 (429-488)||(28876524-28876583)
chr4 (404-454)||(13502487-13502537)
chr4 (351-488)||(9415797-9415932)
chr4 (420-488)||(34406484-34406551)
chr4 (420-488)||(44157522-44157590)
chr4 (351-426)||(3292805-3292880)
chr4 (429-488)||(30215956-30216015)
chr4 (429-488)||(33135654-33135713)
chr4 (431-490)||(56226192-56226251)
chr4 (429-487)||(42332983-42333041)
chr4 (434-488)||(50204302-50204356)
chr4 (351-447)||(15742705-15742799)
chr4 (351-444)||(29094332-29094425)
chr4 (349-426)||(42333685-42333762)
chr4 (351-400)||(56226267-56226316)
[»] chr8 (9 HSPs)
chr8 (351-487)||(33947257-33947393)
chr8 (420-488)||(3436131-3436199)
chr8 (358-488)||(9878118-9878247)
chr8 (411-470)||(15863523-15863582)
chr8 (439-488)||(32539693-32539742)
chr8 (351-444)||(33532980-33533073)
chr8 (698-738)||(6290214-6290254)
chr8 (351-487)||(33947628-33947763)
chr8 (388-487)||(40401350-40401449)
[»] chr3 (14 HSPs)
chr3 (698-769)||(11021744-11021815)
chr3 (406-470)||(19814987-19815052)
chr3 (405-497)||(10842491-10842583)
chr3 (351-478)||(5177104-5177231)
chr3 (355-486)||(38415649-38415783)
chr3 (430-488)||(5136191-5136249)
chr3 (429-487)||(11017480-11017538)
chr3 (373-462)||(8257706-8257795)
chr3 (351-466)||(219475-219590)
chr3 (351-485)||(16094283-16094418)
chr3 (404-454)||(218796-218846)
chr3 (420-486)||(27936081-27936147)
chr3 (439-488)||(29564382-29564431)
chr3 (429-470)||(35938141-35938182)
[»] chr1 (8 HSPs)
chr1 (372-496)||(17458081-17458204)
chr1 (420-488)||(17446191-17446259)
chr1 (420-488)||(41971457-41971525)
chr1 (420-487)||(15209490-15209557)
chr1 (420-486)||(3829883-3829949)
chr1 (351-470)||(17745041-17745162)
chr1 (352-467)||(9901855-9901968)
chr1 (352-398)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (351-478)||(18213-18340)
[»] chr6 (4 HSPs)
chr6 (382-497)||(16793782-16793897)
chr6 (351-486)||(23217804-23217939)
chr6 (373-451)||(28932958-28933036)
chr6 (351-426)||(28996913-28996988)
[»] scaffold0154 (1 HSPs)
scaffold0154 (420-488)||(32113-32181)


Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 482
Target Start/End: Original strand, 6350042 - 6350514
Alignment:
Q  8 atgtcaaatatatagattttggtgttaatgtgatttaatttctctctttctttacacgtcgacataaggtttggtatgtgatgataattagtcatacaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6350042 atgtcaaatatatagattttggtgttaatgtgatttaatttctc--tttctttccacgtcgacataaggtttggtatgtgatgataattagtcatacaaa 6350139  T
Q  108 gtttttagtgtccctgagtaattttgtgagtctttgggtgagtttgtgcttgtttgatctttgcaacaaattgaagaattttctctatgtgaaaatagct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350140 gtttttagtgtccctgagtaattttgtgagtctttgggtgagtttgtgcttgtttgatctttgcaacaaattgaagaattttctctatgtgaaaatagct 6350239  T
Q  208 tgaaaccatatcaaatcacccaaaccaaacaactttgtggtcgcggtaagctttctataagatgtgtcaagtgacctctagaggtataatcactacaaac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350240 tgaaaccatatcaaatcacccaaaccaaacaactttgtggtcgcggtaagctttctataagatgtgtcaagtgacctctagaggtataatcactacaaac 6350339  T
Q  308 gttagagtgataagaaatggacaagaagtgaataaaaattcgattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350340 gttagagtgataagaaatggacaagaagtgaataaaaattcgattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaa 6350439  T
Q  408 attaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaa 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350440 attaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaa 6350514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 627 - 895
Target Start/End: Original strand, 6350621 - 6350893
Alignment:
Q  627 aagagggaaaacgatggagaaaatggaatttctttattaccaactctctctttttaacctttgttgtaaccgttaagaatggaagaagaagaaagattac 726  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  6350621 aagagggaaaacgatggagaaaatggaatttctttattactaactctctctctttaacctctgttgtaaccgttaagaatggaagaagaagaaagattac 6350720  T
Q  727 ttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagttatgatagagtgcagttagtc 824  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350721 ttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgttatggcagttagagagagttatgatagagtgcagttagtc 6350820  T
Q  825 tatgatagctaa--gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctc 895  Q
    |||| ||| |||  |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6350821 tatggtaggtaaacgcttaagcattttaccaaactcagttagtgaaataatgaattttccctcttctattctc 6350893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 33387637 - 33387490
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttat- 449  Q
    ||||||||  ||||||||  | ||||||||| ||||||| ||||||||  || |||||| ||||||||||||| ||| | |||||||||||||| || |     
T  33387637 ttaattgtcaaaattgaccttgtaatatacatgaagtctaaacaatgatcctataaaataaaaaacacatattataaccctgtaatttgagatttttttc 33387538  T
Q  450 -tatttatgaccctataatatacgtaaagtccaaaaaagcgaactaga 496  Q
      |||| ||||||| ||||||| | || |||||||| ||||| |||||    
T  33387537 ccatttttgaccctttaatatatgcaacgtccaaaagagcgacctaga 33387490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 7003653 - 7003524
Alignment:
Q  358 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 456  Q
    |||||||||||  | ||||||||  |||||||||| | |||| || |||  ||||| |||| ||||||| | ||||||||| || ||| |||||||||||    
T  7003653 ttgaaattgaccatgtaatatacgtgaagtctgaaaattgaccctataa--ttaaataacatatattctgaccatgtaattcgatatttttattatttat 7003556  T
Q  457 gaccctataatatacgtaaagtccaaaaaagc 488  Q
     ||||| |||||||||  ||||||||||||||    
T  7003555 aaccctgtaatatacgcgaagtccaaaaaagc 7003524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 7049524 - 7049395
Alignment:
Q  358 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 456  Q
    |||||||||||  | ||||||||  |||||||||| | |||| || |||  ||||| |||| ||||||| | ||||||||| || ||| |||||||||||    
T  7049524 ttgaaattgaccatgtaatatacgtgaagtctgaaaattgaccctataa--ttaaataacatatattctgaccatgtaattcgatatttttattatttat 7049427  T
Q  457 gaccctataatatacgtaaagtccaaaaaagc 488  Q
     ||||| |||||||||  ||||||||||||||    
T  7049426 aaccctgtaatatacgcgaagtccaaaaaagc 7049395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 427
Target Start/End: Original strand, 13072043 - 13072119
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaa 427  Q
    |||||| ||||||||||| || |||||||  ||||||||||| |||||| |  |||||| |||||||||||||||||    
T  13072043 ttaattattgaaattgaccctgtaatatatgcgaagtctgaaaaatgaccccgtaaaataaaaaacacatattctaa 13072119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 447
Target Start/End: Original strand, 21420055 - 21420151
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 447  Q
    ||||||||||||||||||  | ||||||||  |||||||||| ||||| ||| |||||  ||||||| | ||||||| | |||||||||| ||||||    
T  21420055 ttaattgttgaaattgaccttgtaatatacgtgaagtctgaaaaatgattctataaaaaaaaaaacatagattctaaccctgtaatttgatattctt 21420151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 351 - 470
Target Start/End: Original strand, 32198872 - 32198991
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctt-taaaattaaaaacacatattctaaacatgtaatttgagattcttat 449  Q
    |||||| || ||||||||  | |||||||| |  |||||||| ||||| |||| ||||| |||||||||||||||||| | | ||||||||||||||| |    
T  32198872 ttaattatttaaattgaccttgtaatatacgcatagtctgaaaaatga-tcttgtaaaaataaaaacacatattctaaccctataatttgagattcttct 32198970  T
Q  450 tatttatgaccctataatata 470  Q
    ||||| || |||| |||||||    
T  32198971 tatttttggccctctaatata 32198991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 484
Target Start/End: Complemental strand, 36659134 - 36659070
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaa 484  Q
    |||||| | |||||||||||||||| ||||||||||| ||||| |||||||||  ||||||||||    
T  36659134 tattctgaccatgtaatttgagatttttattatttataaccctgtaatatacgcgaagtccaaaa 36659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 487
Target Start/End: Complemental strand, 44832805 - 44832729
Alignment:
Q  411 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    ||||||||||||| ||| | |||||||||||||||||||||||| ||||||| |||  ||  | |||||||||||||    
T  44832805 aaaaacacatattttaaccctgtaatttgagattcttattatttttgaccctgtaaattagttgaagtccaaaaaag 44832729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 49010688 - 49010640
Alignment:
Q  439 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||||    
T  49010688 gagatttttattatttatgaccctgtaatatacgtgaagtccaaaaaag 49010640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 404 - 471
Target Start/End: Original strand, 23581250 - 23581317
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 471  Q
    |||||||||||| ||||||||||| | |||||||||||| |||| ||| || | ||||||||||||||    
T  23581250 taaaattaaaaatacatattctaaccctgtaatttgagaatctttttagttttaaccctataatatac 23581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 486
Target Start/End: Complemental strand, 23090313 - 23090231
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 486  Q
    |||||| ||||||||||||| ||| | |||||||| | ||| |||||||||  |||||| |||||||  ||||||||||||||    
T  23090313 taaaataaaaaacacatattataatcttgtaatttaatatttttattattttcgaccctttaatatagttaaagtccaaaaaa 23090231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 405 - 487
Target Start/End: Original strand, 28836988 - 28837070
Alignment:
Q  405 aaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||| ||||||| || ||| ||| | ||| |||||| ||||||||||||||||||||| ||||||| || ||||||| |||||    
T  28836988 aaaaataaaaacgcaaattttaaccttgttatttgatattcttattatttatgaccctgtaatatatgtgaagtccagaaaag 28837070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 459
Target Start/End: Original strand, 8722525 - 8722633
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| ||||||||| | || |||||||    ||||||||  ||||||| | |||||| ||||||| ||||| | | | ||||||| ||||||||||||    
T  8722525 ttaattattgaaattgtccctgtaatatatgtaaagtctgataaatgactttgtaaaataaaaaacatatattatgaccctgtaattcgagattcttatt 8722624  T
Q  451 atttatgac 459  Q
    |||||||||    
T  8722625 atttatgac 8722633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 8866941 - 8867000
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||| || ||| ||||||||||| ||| | |||||||||| ||||||||||||||    
T  8866941 catgtaattcgaaatttttattatttataaccttgtaatatacgtgaagtccaaaaaagc 8867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 404 - 478
Target Start/End: Original strand, 31251965 - 31252039
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagt 478  Q
    |||||| ||||||||||||||||| ||| || ||||| ||||||||||| | | ||| | ||||||||| |||||    
T  31251965 taaaataaaaaacacatattctaaccatatattttgatattcttattatctttaaccttgtaatatacgcaaagt 31252039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 48614183 - 48614137
Alignment:
Q  394 aatgactctttaaaattaaaaacacatattctaaacatgtaatttga 440  Q
    ||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  48614183 aatgactctgtaaaaataaaaacacatattttaaatatgtaatttga 48614137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 553618 - 553569
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatt 453  Q
    |||||||||||||||||||||||  |||||||||||| ||| || |||||    
T  553618 taaaattaaaaacacatattctagtcatgtaatttgaaattattcttatt 553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 8867717 - 8867640
Alignment:
Q  349 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||||||||| |||||||| |||||||||||   | ||||||| |||||| ||| |||||  |||||| ||||||||    
T  8867717 gattaattgttcaaattgaccctataatataccttatgtctgaaaaatgacccttaaaaatacaaaacatatattcta 8867640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 487
Target Start/End: Original strand, 33386831 - 33386911
Alignment:
Q  406 aaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||| ||||||| ||||| ||| ||||||||||||||||||| || ||| ||||||| ||||||| |   ||||||||||||    
T  33386831 aaataaaaaacatatattttaatcatgtaatttgagattctttttgttt-tgaccctctaatatatgcgtagtccaaaaaag 33386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 33685745 - 33685822
Alignment:
Q  349 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||||||||| |||||||| || |||||||||  | ||||||| |||||| || ||||||  |||||| ||||||||    
T  33685745 gattaattgttcaaattgaccctgtaatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattcta 33685822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 1e-37; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 708 - 813
Target Start/End: Original strand, 35081986 - 35082093
Alignment:
Q  708 gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccacataa--ttagattctgttatggcagttagagagagtta 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||||||  ||    
T  35081986 gaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaactaacttgccacataagcttagattctgctatggcagttagagagaacta 35082085  T
Q  806 tgatagag 813  Q
    ||||||||    
T  35082086 tgatagag 35082093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 837 - 895
Target Start/End: Original strand, 35084185 - 35084243
Alignment:
Q  837 gcttaaccattgtaccaaactcagttagtgaaataatgaattttccctcttctattctc 895  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  35084185 gcttaaccattgtaacaaactcggttagtgaaataatgaattttctctcttctattctc 35084243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 471
Target Start/End: Original strand, 21556283 - 21556403
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| ||| ||||  | ||| |||||||| ||||||| ||||||  | |||||| ||| | ||||||| |||  |||||||||||||||||| |     
T  21556283 ttaattgtttaaactgaccatttaaaatacacgatgtctgaaaaatgaccttgtaaaataaaatatacatattataactatgtaatttgagattcttcta 21556382  T
Q  451 atttatgaccctataatatac 471  Q
    |||| ||||||||||||||||    
T  21556383 atttttgaccctataatatac 21556403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 469
Target Start/End: Original strand, 18829074 - 18829157
Alignment:
Q  386 gtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatat 469  Q
    ||||||| |||||  || |||||| ||||| ||||||||||| |   |||||||||||||||||||||| ||||||||||||||    
T  18829074 gtctgaaaaatgatcctgtaaaataaaaaatacatattctaacctcataatttgagattcttattatttttgaccctataatat 18829157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 487
Target Start/End: Complemental strand, 37621988 - 37621905
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||||| ||||| | ||||| ||| ||||||||||||||||||| ||| || ||||||||||||||||||   |||||||||||    
T  37621988 taaaataaaaaatagatattttaaccatgtaatttgagattcttcttacttttgaccctataatatacgtgtggtccaaaaaag 37621905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 488
Target Start/End: Original strand, 15441489 - 15441595
Alignment:
Q  382 cgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtcca 481  Q
    ||||||||||| ||| || ||||||||| |||| || |||||||||   |||||||||| ||||||||||||| | ||| | |||||||  | |||||||    
T  15441489 cgaagtctgaaaaataaccctttaaaataaaaaccatatattctaactctgtaatttgatattcttattatttttcaccatgtaatatagttgaagtcca 15441588  T
Q  482 aaaaagc 488  Q
    |||||||    
T  15441589 aaaaagc 15441595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 18829932 - 18829830
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| |||||||||||  | |||||||    ||||||||| ||||||  | |||||| |||| |||||||||||| | ||||||||||||||||||||    
T  18829932 ttaattattgaaattgaccatgtaatatatgtaaagtctgaaaaatgacattgtaaaataaaaagcacatattctaaccctgtaatttgagattcttatt 18829833  T
Q  451 att 453  Q
    |||    
T  18829832 att 18829830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 351 - 496
Target Start/End: Complemental strand, 17373814 - 17373669
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| |||||||  || ||| |||| | | ||||||| ||||||  | |||||| ||||| | |||||||||   |||||||||||||||||  |    
T  17373814 ttaattgtttaaattgagcctgtaaaatacccaatgtctgaaaaatgaccatgtaaaataaaaaatagatattctaactctgtaatttgagattcttcgt 17373715  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaagcgaactaga 496  Q
    |||| ||||| |||||||||||  | ||||||||||| || |||||    
T  17373714 atttttgaccttataatatacgcgaggtccaaaaaagtgatctaga 17373669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 488
Target Start/End: Original strand, 7071742 - 7071802
Alignment:
Q  428 acatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||| ||||||||| ||||||||||| ||||  |||||||||  ||||||||||||||    
T  7071742 acatgtagtttgagatttttattatttataacccactaatatacgcgaagtccaaaaaagc 7071802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 17444236 - 17444303
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| |||||||||| ||||||||||||||    
T  17444236 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgtgaagtccaaaaaagc 17444303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 26161903 - 26161970
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  26161903 tattctgaccatgtaattcgagatttttattatttat-accctgtaatatacgcgaagtccaaaaaagc 26161970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 26238130 - 26238201
Alignment:
Q  355 ttgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||| |||||||||||||||||||||  | ||||||| |||||| || ||||||  |||||| ||||||||    
T  26238130 ttgttcaaattgactctataatatacattatgtctgaaaaatgaccctgtaaaatacaaaacatatattcta 26238201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 470
Target Start/End: Original strand, 26591296 - 26591355
Alignment:
Q  411 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 470  Q
    ||||| || |||||||| |||||||||| | |||||| |||||| |||||||||||||||    
T  26591296 aaaaatacttattctaaccatgtaatttcatattcttcttatttttgaccctataatata 26591355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 446 - 488
Target Start/End: Original strand, 12756065 - 12756107
Alignment:
Q  446 ttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  12756065 ttattatttataaccctataatatacgcgaagtccaaaaaagc 12756107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 488
Target Start/End: Complemental strand, 15512522 - 15512385
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| |||||||||||  |  |||||| | ||| |||||| |||||  ||  ||||| ||||||| |||||||||   |||||||||||||| |||||    
T  15512522 ttaattattgaaattgaccatgcaatatatatgaaatctgaaaaatgatgctgaaaaataaaaaacatatattctaactctgtaatttgagatttttatt 15512423  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||| |  | || |||||||  | ||||||||||||||    
T  15512422 atttttttctctgtaatatagttgaagtccaaaaaagc 15512385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 40654213 - 40654140
Alignment:
Q  381 acgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 454  Q
    |||||||||||| ||| ||||| |||| | |||| |||||||||||| | | |||||||||||  |||||||||    
T  40654213 acgaagtctgaaaaataactctgtaaactaaaaatcacatattctaaccctctaatttgagatgtttattattt 40654140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 351 - 488
Target Start/End: Complemental strand, 23034998 - 23034862
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| ||||||||||  || |||||||||||||||||||| ||||||||| |||||| ||||| ||||||| | | ||||||||| || ||| ||| |    
T  23034998 ttaattattgaaattgatcctgtaatatacacgaagtctgaaaaatgactctgtaaaat-aaaaatacatattatgaccatgtaattcgatatttttact 23034900  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  23034899 atttatgaccctataatatacgtgaagtccaaaaaagc 23034862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 351 - 488
Target Start/End: Original strand, 30297107 - 30297242
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| |||||||||||  | ||||||| ||||||||| || ||||||  | | |||| |||| |||||||||||| | ||||||| ||||||||||||    
T  30297107 ttaattattgaaattgaca-tgtaatataaacgaagtctcaa-aatgacgttgttaaataaaaatcacatattctaaccctgtaattcgagattcttatt 30297204  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||||| | | | |||||||||||||||||||||||    
T  30297205 atttatgatcatgtgatatacgtaaagtccaaaaaagc 30297242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 15959146 - 15959214
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| ||||||||||| |||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  15959146 tattctgaacatgtaattcgagatttttattatttataaccctataatatacgcgaagtccaaaaaagc 15959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 8788801 - 8788726
Alignment:
Q  410 taaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaa 485  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| | || ||||||||||  |||||||||||||    
T  8788801 taaaaacacatattttagccatgtaatttgagattcttattattttttactctataatatagttaaagtccaaaaa 8788726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 470
Target Start/End: Original strand, 20368293 - 20368351
Alignment:
Q  412 aaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 470  Q
    |||| ||||||| ||||| ||||||||||||||||| |||||| ||||| |||||||||    
T  20368293 aaaagacatattttaaacttgtaatttgagattcttcttatttttgaccatataatata 20368351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 487
Target Start/End: Original strand, 8788018 - 8788156
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttat- 449  Q
    ||||||||| |||||||| || ||| |||  |||   ||||| ||| || || |||||| ||||||| |||||||||   |||||||||||||| || |     
T  8788018 ttaattgtttaaattgacactgtaaaatatgcgatacctgaaaaataaccctgtaaaataaaaaacaaatattctaactttgtaatttgagatttttttc 8788117  T
Q  450 -tatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
     ||||| ||||||||||||||||||   |||||||||||    
T  8788118 ttatttttgaccctataatatacgtgtggtccaaaaaag 8788156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 12278065 - 12278124
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||| | ||||||||||||||    
T  12278065 catgtaattcgaaatttttattatttataaccctgtaatatacatgaagtccaaaaaagc 12278124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 471
Target Start/End: Original strand, 20362932 - 20362991
Alignment:
Q  412 aaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 471  Q
    |||| ||||||| ||| | ||||||||||||||||| |||||| ||||| ||||||||||    
T  20362932 aaaagacatattttaaccttgtaatttgagattcttcttatttttgaccatataatatac 20362991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 349 - 471
Target Start/End: Original strand, 20628655 - 20628777
Alignment:
Q  349 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctta 448  Q
    |||| ||||||||||||||| || ||||||||  |||||||||| ||||||| | |||||| |||||||||||||  || | |||||||||| |||||||    
T  20628655 gattgattgttgaaattgaccctgtaatatacgggaagtctgaaaaatgactatgtaaaataaaaaacacatattaaaaccttgtaatttgatattctta 20628754  T
Q  449 ttatttatgaccctataatatac 471  Q
    |||||| | ||||| ||||||||    
T  20628755 ttattttttaccctgtaatatac 20628777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 351 - 487
Target Start/End: Original strand, 20635493 - 20635629
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| ||||||||  |  |||||| | ||| ||| || |||||  || |||||| ||||||||||||| ||| | |||||||||| ||||| |||    
T  20635493 ttaattgtttaaattgaccttgcaatatatatgaaatctcaaaaatgaacctgtaaaataaaaaacacatattttaaccttgtaatttgatattctcatt 20635592  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||| | |||||||||| ||| | |||||||||||||    
T  20635593 attttttaccctataatgtacattaagtccaaaaaag 20635629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 473
Target Start/End: Complemental strand, 2941508 - 2941386
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||||||||||||||   | |||||||  ||  ||||||| |||||| || ||||| |||||||||||||| |||   |||||||||| ||||||  |    
T  2941508 ttaattgttgaaattgatcttgtaatataggcgtggtctgaaaaatgaccctgtaaaaataaaaacacatattttaactctgtaatttgatattctttct 2941409  T
Q  451 atttatgaccctataatatacgt 473  Q
    |||| ||||||||||||| ||||    
T  2941408 atttttgaccctataatacacgt 2941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 473
Target Start/End: Complemental strand, 3222354 - 3222232
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| |||||||| |  ||| |||||| | || |||| ||| |  || |||||| ||||| |||||||||||   ||| ||||||||||||| ||    
T  3222354 ttaattgtttaaattgaccccgtaaaatacacaatgtttgaaaaataatcctgtaaaatgaaaaatacatattctaactctgtcatttgagattcttctt 3222255  T
Q  451 atttatgaccctataatatacgt 473  Q
    |||| ||||||||||||||||||    
T  3222254 atttttgaccctataatatacgt 3222232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 471
Target Start/End: Original strand, 5290651 - 5290749
Alignment:
Q  373 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatac 471  Q
    ||||| ||| ||||||| || ||| || || ||||| |||||| ||||||| ||||| ||||||||||||||||| |||||| | ||| ||||||||||    
T  5290651 taatacacatgaagtctaaaaaataacgctataaaaataaaaagacatattttaaacttgtaatttgagattcttcttattttttaccatataatatac 5290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 410 - 472
Target Start/End: Complemental strand, 33846542 - 33846480
Alignment:
Q  410 taaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacg 472  Q
    |||||||||||||| ||| |||||||||||| |||||| |||||| ||||||| |||||||||    
T  33846542 taaaaacacatattataaccatgtaatttgatattcttcttatttttgaccctttaatatacg 33846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 358 - 488
Target Start/End: Original strand, 26546456 - 26546588
Alignment:
Q  358 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaaca--catattctaaacatgtaatttgagattcttattattta 455  Q
    ||||||||||  || |||||||  ||||||||||| | | ||||| |||||| ||||| |  || |||||||   ||||||||||||||||||||||||     
T  26546456 ttgaaattgatcctgtaatatatgcgaagtctgaaaattaactctgtaaaataaaaaaaaaacacattctaactctgtaatttgagattcttattatttt 26546555  T
Q  456 tgaccctataatatacgtaaagtccaaaaaagc 488  Q
     |||||| |||||||  | ||||||||||||||    
T  26546556 ggaccctgtaatatagttgaagtccaaaaaagc 26546588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 13390648 - 13390716
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  13390648 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 13390716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 454
Target Start/End: Complemental strand, 31854250 - 31854155
Alignment:
Q  358 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 454  Q
    ||||||||||| || |||||||   |||||||||| |||||| || |||||| ||||||| ||||| ||| | |||||||||| |||||||||||||    
T  31854250 ttgaaattgac-ctgtaatatatgtgaagtctgaaaaatgaccctgtaaaataaaaaacatatattataatcctgtaatttgatattcttattattt 31854155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 28876524 - 28876583
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  28876524 catgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 28876583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 13502537 - 13502487
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 454  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||| ||||||    
T  13502537 taaaattaaaaacatatattttaaacatataatttgagattcttcttattt 13502487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 488
Target Start/End: Complemental strand, 9415932 - 9415797
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| ||||||||||| || |||||||  ||||||||||| ||| || |  |||| | || |||||||||| ||| | |||||||||||||||| |||    
T  9415932 ttaattattgaaattgaccctgtaatatatgcgaagtctgaaaaat-acccactaaa-taaataacacatattataaccctgtaatttgagattctgatt 9415835  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
     ||| ||||||| || ||||  | ||||||||||||||    
T  9415834 ctttttgaccctgtattatagttgaagtccaaaaaagc 9415797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 34406484 - 34406551
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| | ||| ||||||||| |||||||||||||||    
T  34406484 tattctgaccatgtaattcgagatttttattatttat-aacctgtaatatacgcaaagtccaaaaaagc 34406551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 44157590 - 44157522
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | |||| |||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  44157590 tattctgaccatgcaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 44157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 3292880 - 3292805
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||||||| ||||||||||| ||||||||   | ||||||| |||||||||| |||||  |||||| ||||||||    
T  3292880 ttaattgttcaaattgactctgtaatataccttatgtctgaaaaatgactcttaaaaatacaaaacatatattcta 3292805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 30215956 - 30216015
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  30215956 catgtaattcgaaatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 30216015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 488
Target Start/End: Original strand, 33135654 - 33135713
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    ||||||||| |||||| ||||||||||| ||| | |||||||||  ||||||||||||||    
T  33135654 catgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaagc 33135713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 490
Target Start/End: Complemental strand, 56226251 - 56226192
Alignment:
Q  431 tgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagcga 490  Q
    |||||||||| |||||||||||||  ||||  ||||||||||  ||||||||||||||||    
T  56226251 tgtaatttgatattcttattatttgagaccaaataatatacgagaagtccaaaaaagcga 56226192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 42332983 - 42333041
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    ||||||||| || ||| ||||||||||| ||||| |||||||||  |||||||||||||    
T  42332983 catgtaattcgaaatttttattatttataaccctgtaatatacgcgaagtccaaaaaag 42333041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 434 - 488
Target Start/End: Original strand, 50204302 - 50204356
Alignment:
Q  434 aatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  50204302 aattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 50204356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 447
Target Start/End: Complemental strand, 15742799 - 15742705
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattctt 447  Q
    ||||||||| ||||||| ||| |||||||| |  |||||||| | ||||  | ||||| |||||||||||||||||| | |||  ||||||||||||    
T  15742799 ttaattgttcaaattgattctgtaatatacgcatagtctgaaaactgaccttgtaaaaataaaaacacatattctaaccctgt--tttgagattctt 15742705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 29094332 - 29094425
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagatt 444  Q
    ||||||||| ||| |||| || ||| |||| | | ||||||| ||| || || |||||| ||||| ||||||||||| | ||||||||||||||    
T  29094332 ttaattgtttaaaatgaccctgtaaaatacgcaatgtctgaaaaataaccctgtaaaataaaaaatacatattctaaccctgtaatttgagatt 29094425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 42333762 - 42333685
Alignment:
Q  349 gattaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||||||||| ||||||||||| ||||||||   | ||||||| |||||| ||| |||||  |||||| ||||||||    
T  42333762 gattaattgttcaaattgactctgtaatataccttatgtctgaaaaatgacccttaaaaatacaaaacatatattcta 42333685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 56226316 - 56226267
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgact 400  Q
    ||||||||||||||| ||| | ||||||||||||||||| || |||||||    
T  56226316 ttaattgttgaaattaactttgtaatatacacgaagtctaaaaaatgact 56226267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 351 - 487
Target Start/End: Original strand, 33947257 - 33947393
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| ||||||||  | |||||||  ||||||||||| ||||||||| || || ||||| ||| |||| ||| | |||||||||||||||||  |    
T  33947257 ttaattgttcaaattgaccatgtaatataggcgaagtctgaaaaatgactctgtacaaataaaagcacgtattttaaccttgtaatttgagattcttcat 33947356  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    || | ||||||||||||||| || |||||||||||||    
T  33947357 atgtttgaccctataatatatgtgaagtccaaaaaag 33947393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 3436199 - 3436131
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||| ||||||||||||| |||||| ||||||||||| ||| | ||||||||| |||||||||||||||    
T  3436199 tattttaaacatgtaattcgagatttttattatttataaccttgtaatatacgcaaagtccaaaaaagc 3436131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 9878247 - 9878118
Alignment:
Q  358 ttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa-aacacatattctaaacatgtaatttgagattcttattatttat 456  Q
    |||||||||||  | ||||||||| |||||||||| | |||| || |||  ||||| ||||  |||||| | ||||||||| |||||| |||||||||||    
T  9878247 ttgaaattgaccatgtaatatacatgaagtctgaaaattgaccctgtaa--ttaaataacatgtattctgaccatgtaattcgagatttttattatttat 9878150  T
Q  457 gaccctataatatacgtaaagtccaaaaaagc 488  Q
     ||| | |||||||||  ||||||||||||||    
T  9878149 aaccttgtaatatacgcgaagtccaaaaaagc 9878118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 411 - 470
Target Start/End: Complemental strand, 15863582 - 15863523
Alignment:
Q  411 aaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 470  Q
    ||||| |||||||| |||| ||||||||||||| ||| |||||| |||||||||||||||    
T  15863582 aaaaatacatattccaaacttgtaatttgagatacttcttatttttgaccctataatata 15863523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 32539693 - 32539742
Alignment:
Q  439 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  32539693 gagattcttattatttatcaccctgtaaaatacgtgaagtccaaaaaagc 32539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 33533073 - 33532980
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagatt 444  Q
    ||||||||| |||||||  ||||||| |||||||||||| || ||||||| | ||||| ||||| || | ||| ||| | ||||||||||||||    
T  33533073 ttaattgttcaaattgatcctataatgtacacgaagtctaaaaaatgactatgtaaaaataaaatcataaattataaccttgtaatttgagatt 33532980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 738
Target Start/End: Complemental strand, 6290254 - 6290214
Alignment:
Q  698 gttaagaatggaagaagaagaaagattacttgagaagcaag 738  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  6290254 gttaagaatggaagaagaaggaagattacttgaggagcaag 6290214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 351 - 487
Target Start/End: Complemental strand, 33947763 - 33947628
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| || ||||||||  | ||||||||   ||||||||| ||||||  | ||||| |||||||| ||||| ||| | |||||||||| |||| | ||    
T  33947763 ttaattattcaaattgacaatgtaatatacgtaaagtctgaa-aatgaccatgtaaaaataaaaacatatattttaaccctgtaatttgaaattcatctt 33947665  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||| ||||||| |||| ||||  |||||||||||||    
T  33947664 atttttgaccctctaatgtacgctaagtccaaaaaag 33947628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 487
Target Start/End: Complemental strand, 40401449 - 40401350
Alignment:
Q  388 ctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    ||||| |||||| ||| ||||| || ||| |||||||||| | ||||| |||| |||||| |||||| | ||||||||||||| |   ||||||||||||    
T  40401449 ctgaaaaatgacacttgaaaataaataacgcatattctaatcttgtaaattgatattcttcttatttttaaccctataatatatgcgtagtccaaaaaag 40401350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 698 - 769
Target Start/End: Complemental strand, 11021815 - 11021744
Alignment:
Q  698 gttaagaatggaagaagaagaaagattacttgagaagcaagtaacttgacatagctctaagtaacttgccac 769  Q
    |||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||  ||||||||||    
T  11021815 gttaagaatggaagaagatggaagattacttgaggagcaagtaacctgacatagctctaacaaacttgccac 11021744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 406 - 470
Target Start/End: Complemental strand, 19815052 - 19814987
Alignment:
Q  406 aaattaaaaac-acatattctaaacatgtaatttgagattcttattatttatgaccctataatata 470  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  19815052 aaattaaaaaccacatattctaaccatgtaatttgagattcttgttatttttgaccctataatata 19814987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 405 - 497
Target Start/End: Complemental strand, 10842583 - 10842491
Alignment:
Q  405 aaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagcgaactagat 497  Q
    |||| |||||||||||||||||| |||||||||||| ||||||  ||||||||||||| ||||||| || | ||||| ||| |||| ||||||    
T  10842583 aaaaataaaaacacatattctaaccatgtaatttgatattcttcctatttatgaccctttaatatatgtgatgtccagaaaggcgatctagat 10842491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 351 - 478
Target Start/End: Original strand, 5177104 - 5177231
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| ||||||||  | ||||| ||| |||||||||| ||||| ||| |||||| |||||||||||||  |  |||||||||||||||| || |     
T  5177104 ttaattgttcaaattgaccatgtaataaacatgaagtctgaaaaatgaatctgtaaaataaaaaacacatatttcacccatgtaatttgagatttttcta 5177203  T
Q  451 atttatgaccctataatatacgtaaagt 478  Q
    |||| | ||| | |||||||||| ||||    
T  5177204 attttttaccatttaatatacgtgaagt 5177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 355 - 486
Target Start/End: Complemental strand, 38415783 - 38415649
Alignment:
Q  355 ttgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaa--cacatattctaaacatgtaatttgagattcttatta- 451  Q
    ||||| |||||||| || ||||||||| || ||||||| ||||||  | |||||| |||||  |||||||| ||| | ||||||||||||||||| |||     
T  38415783 ttgttcaaattgacgctgtaatatacatgatgtctgaaaaatgacattgtaaaataaaaaaaacacatattttaaccctgtaatttgagattcttcttat 38415684  T
Q  452 tttatgaccctataatatacgtaaagtccaaaaaa 486  Q
    ||| | |||||||||||||||   |||||||||||    
T  38415683 ttttttaccctataatatacgcgtagtccaaaaaa 38415649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 5136249 - 5136191
Alignment:
Q  430 atgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||||| |||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  5136249 atgtaattcgagatttttattatttataaccctataatatacgcgaagtccaaaaaagc 5136191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 487
Target Start/End: Original strand, 11017480 - 11017538
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    ||||||||| || ||| ||||||||||| |||||||||||||||| |||||||||||||    
T  11017480 catgtaattcgaaatttttattatttataaccctataatatacgtgaagtccaaaaaag 11017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 373 - 462
Target Start/End: Complemental strand, 8257795 - 8257706
Alignment:
Q  373 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccct 462  Q
    |||||| | |||||| | || |||||| || |||||| ||||||||||||| | | |||||||||  |||||||||||||||||||||||    
T  8257795 taatattcgcgaagtttaaaaaatgaccctgtaaaataaaaaacacatattttgaccatgtaattcaagattcttattatttatgaccct 8257706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 466
Target Start/End: Complemental strand, 219590 - 219475
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    ||||||||| ||||||||||| ||| ||||  || ||||||| ||||||  | |||||| ||||| | ||||| ||| | || ||||||| |||||| ||    
T  219590 ttaattgtttaaattgactctgtaaaatacgtgatgtctgaaaaatgacattgtaaaataaaaaatagatattttaaccttgcaatttgaaattcttctt 219491  T
Q  451 atttatgaccctataa 466  Q
    |||| |||| ||||||    
T  219490 atttttgactctataa 219475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 485
Target Start/End: Original strand, 16094283 - 16094418
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaac-acatattctaaacatgtaatttgagattcttat 449  Q
    |||||| ||||||||||| |  |||||||  ||||||||||| | |||| || |||||| |||||  ||||||| ||| | ||||||||||||| |||||    
T  16094283 ttaattattgaaattgacccagtaatatatgcgaagtctgaaaattgaccctgtaaaataaaaaaatacatattataaccctgtaatttgagatccttat 16094382  T
Q  450 tatttatgaccctataatatacgtaaagtccaaaaa 485  Q
     |||| |  |||| |||||||  | |||||||||||    
T  16094383 aattttttgccctgtaatatagttgaagtccaaaaa 16094418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 404 - 454
Target Start/End: Original strand, 218796 - 218846
Alignment:
Q  404 taaaattaaaaacacatattctaaacatgtaatttgagattcttattattt 454  Q
    |||||| ||||||||||||| ||| | ||||||||| ||||||||||||||    
T  218796 taaaataaaaaacacatattataaccctgtaatttgggattcttattattt 218846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 27936147 - 27936081
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 486  Q
    |||||| | ||||| |||||||||  ||||||||||| ||||| |||||||||  ||||||||||||    
T  27936147 tattctgaccatgtgatttgagatatttattatttataaccctgtaatatacgcgaagtccaaaaaa 27936081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 29564382 - 29564431
Alignment:
Q  439 gagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| ||||||||||||||| | | |||||||| ||||||||||||||    
T  29564382 gagattattattatttatgaccatgtcatatacgtgaagtccaaaaaagc 29564431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 35938182 - 35938141
Alignment:
Q  429 catgtaatttgagattcttattatttatgaccctataatata 470  Q
    |||||||||| ||||||||||||||| |||||| ||||||||    
T  35938182 catgtaatttaagattcttattatttttgaccccataatata 35938141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 17458204 - 17458081
Alignment:
Q  372 ataatatacacgaagtctgaacaatgactctt-taaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatata 470  Q
    |||||||||||  |||||||| ||||| |||| | ||| |||||||||||||||||  | ||||||||||||||||| |||||| |||| ||||||||||    
T  17458204 ataatatacacttagtctgaaaaatga-tcttgttaaaataaaaacacatattctactc-tgtaatttgagattcttcttatttttgacgctataatata 17458107  T
Q  471 cgtaaagtccaaaaaagcgaactaga 496  Q
     |  ||||||| ||||| || |||||    
T  17458106 tgcgaagtccataaaagtgacctaga 17458081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 17446259 - 17446191
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||||    
T  17446259 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaagc 17446191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 420 - 488
Target Start/End: Original strand, 41971457 - 41971525
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| ||||||||| |||||||| |||||||||||  |||| |||||||||  ||||||||||||||    
T  41971457 tattctgaacatgtaacttgagatttttattatttatagccctgtaatatacgcgaagtccaaaaaagc 41971525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 420 - 487
Target Start/End: Original strand, 15209490 - 15209557
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaag 487  Q
    |||||| ||||||||||| |||||| ||||||||||| ||| | |||||||||  |||||||||||||    
T  15209490 tattctgaacatgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaag 15209557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 3829949 - 3829883
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaa 486  Q
    |||||| | ||||||||| |||||| ||||||||||| ||||| |||||||||  ||||||||||||    
T  3829949 tattctgaccatgtaattcgagatttttattatttataaccctgtaatatacgcgaagtccaaaaaa 3829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 351 - 470
Target Start/End: Complemental strand, 17745162 - 17745041
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaa--aacacatattctaaacatgtaatttgagattctta 448  Q
    |||||| |||| ||||||  | |||||||  ||||||||||| |||||  || |||||| |||  || ||||||||||| |||| ||||||||||| |||    
T  17745162 ttaattattgacattgaccatgtaatatattcgaagtctgaaaaatgaacctgtaaaataaaataaaaacatattctaaccatgcaatttgagattttta 17745063  T
Q  449 ttatttatgaccctataatata 470  Q
    |||||| ||||| | |||||||    
T  17745062 ttatttttgaccgtgtaatata 17745041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 467
Target Start/End: Complemental strand, 9901968 - 9901855
Alignment:
Q  352 taattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatta 451  Q
    |||||||| ||||| ||||| ||||| || ||| || |||| ||| |  || |||||| ||||||||||  ||||| |||||||||| | |||||| |||    
T  9901968 taattgttcaaattaactctgtaatacacgcgatgtttgaaaaataatcctataaaataaaaaacacat--tctaaccatgtaattttatattcttctta 9901871  T
Q  452 tttatgaccctataat 467  Q
    ||| ||||||||||||    
T  9901870 tttttgaccctataat 9901855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 398
Target Start/End: Complemental strand, 33658941 - 33658895
Alignment:
Q  352 taattgttgaaattgactctataatatacacgaagtctgaacaatga 398  Q
    |||| ||| |||||||||||||||||||||||||||| ||| |||||    
T  33658941 taatcgttcaaattgactctataatatacacgaagtcagaaaaatga 33658895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 478
Target Start/End: Complemental strand, 18340 - 18213
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| ||||||||||  || |||||||  |||||| |||  |||||| |  ||||||  |||| ||||||| ||| | ||||| || |||||||||||    
T  18340 ttaattattgaaattgatcctgtaatataagcgaagtatgacaaatgacccagtaaaatataaaaaacatattataatcctgtaagttaagattcttatt 18241  T
Q  451 atttatgaccctataatatacgtaaagt 478  Q
    |||||||||||| |||||| ||| ||||    
T  18240 atttatgaccctgtaatattcgtgaagt 18213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 382 - 497
Target Start/End: Original strand, 16793782 - 16793897
Alignment:
Q  382 cgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtcca 481  Q
    ||||||||||| ||| ||||| |||||| |||| |||||||||||||  | ||||| |||| | ||||||||| | ||| | ||||||||  ||||||||    
T  16793782 cgaagtctgaaaaattactctgtaaaataaaaagcacatattctaaatctataattcgagagttttattattttttaccttgtaatatacacaaagtcca 16793881  T
Q  482 aaaaagcgaactagat 497  Q
     |||| ||| ||||||    
T  16793882 gaaaaacgacctagat 16793897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 351 - 486
Target Start/End: Complemental strand, 23217939 - 23217804
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatt 450  Q
    |||||| ||||||||||| || |||||||   || ||||||| ||||||    ||||||  |||||||||||||||| | ||||| |  | |||||||||    
T  23217939 ttaattattgaaattgaccctgtaatataagtgatgtctgaaaaatgacctagtaaaatataaaacacatattctaaccctgtaactcaatattcttatt 23217840  T
Q  451 atttatgaccctataatatacgtaaagtccaaaaaa 486  Q
    |||||||||  | |||||| ||| ||||||||||||    
T  23217839 atttatgactttgtaatattcgtgaagtccaaaaaa 23217804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 373 - 451
Target Start/End: Complemental strand, 28933036 - 28932958
Alignment:
Q  373 taatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattctaaacatgtaatttgagattcttatta 451  Q
    |||||||  ||||||||||| |||||  || |||||| ||||||||||||| ||| | |||||||||| ||||||||||    
T  28933036 taatatatgcgaagtctgaaaaatgaacctgtaaaataaaaaacacatattttaaccctgtaatttgaaattcttatta 28932958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 28996913 - 28996988
Alignment:
Q  351 ttaattgttgaaattgactctataatatacacgaagtctgaacaatgactctttaaaattaaaaacacatattcta 426  Q
    ||||||||| ||||||||||| ||||||||   | ||||||| |||||||||| |||||  |||||| ||||||||    
T  28996913 ttaattgttcaaattgactctgtaatataccttatgtctgaaaaatgactcttaaaaatacaaaacatatattcta 28996988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 488
Target Start/End: Complemental strand, 32181 - 32113
Alignment:
Q  420 tattctaaacatgtaatttgagattcttattatttatgaccctataatatacgtaaagtccaaaaaagc 488  Q
    |||||| | ||||||||| |||||| ||||||||||| ||| | |||||||||  ||||||||||||||    
T  32181 tattctgaccatgtaattcgagatttttattatttataaccttgtaatatacgcgaagtccaaaaaagc 32113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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