View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18830_high_1 (Length: 771)

Name: NF18830_high_1
Description: NF18830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18830_high_1
NF18830_high_1
[»] chr3 (6 HSPs)
chr3 (114-644)||(19768427-19768956)
chr3 (492-712)||(29199150-29199369)
chr3 (117-250)||(29199942-29200074)
chr3 (283-361)||(29200134-29200212)
chr3 (1-55)||(19768314-19768368)
chr3 (1-51)||(29199829-29199879)
[»] chr4 (8 HSPs)
chr4 (114-396)||(37616579-37616860)
chr4 (585-712)||(25901099-25901225)
chr4 (278-349)||(1659810-1659881)
chr4 (278-349)||(32226087-32226158)
chr4 (1-55)||(37616919-37616973)
chr4 (194-251)||(25899421-25899478)
chr4 (468-527)||(5478209-5478268)
chr4 (566-608)||(50227374-50227416)
[»] chr6 (1 HSPs)
chr6 (1-55)||(22083007-22083061)
[»] chr8 (3 HSPs)
chr8 (468-527)||(2685044-2685103)
chr8 (708-758)||(6174362-6174412)
chr8 (119-177)||(770534-770592)
[»] chr2 (1 HSPs)
chr2 (468-527)||(45008469-45008528)
[»] chr1 (2 HSPs)
chr1 (114-177)||(51389463-51389526)
chr1 (1-55)||(51389585-51389639)
[»] chr7 (1 HSPs)
chr7 (198-251)||(32663200-32663253)


Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 114 - 644
Target Start/End: Original strand, 19768427 - 19768956
Alignment:
Q  114 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  19768427 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggttttttt-gcatactattttccctagat 19768525  T
Q  214 tgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggtatgttcaattatattatgca 313  Q
    ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768526 tgtttgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggtatgttcaattatattatgca 19768625  T
Q  314 gatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttattcttggcaggttattgg 413  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19768626 gattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaactatctgcattttttattcttggcaggttattgg 19768725  T
Q  414 aagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgag 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  19768726 aagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggca-gggagaggaaccttaaatcatgtgcaaactgag 19768824  T
Q  514 aaggagaaatttgagaagctga-ttttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctttg 612  Q
    |||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  19768825 aaggagaaatttgagaagctgattttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctttc 19768924  T
Q  613 tcatctcttttgctatagaagaaactataaca 644  Q
    |||||| |||||||||||||||||||||||||    
T  19768925 tcatctattttgctatagaagaaactataaca 19768956  T

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Target: chr3; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 492 - 712
Target Start/End: Original strand, 29199150 - 29199369
Alignment:
Q  492 cttaaatcatgtgcaaactgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttctt 591  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||    
T  29199150 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt 29199249  T
Q  592 ccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctcttgagattt 691  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||       ||||| ||||||    
T  29199250 ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt 29199348  T
Q  692 atctatattgaaattgttcac 712  Q
    |||||||||||||||||||||    
T  29199349 atctatattgaaattgttcac 29199369  T

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Target: chr3; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 117 - 250
Target Start/End: Original strand, 29199942 - 29200074
Alignment:
Q  117 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagattgt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||    
T  29199942 tctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggg-tttttttgcatactaatttccctagattgt 29200040  T
Q  217 gtgattatggaaggttaaacctgaaatgagaatg 250  Q
    ||||||||| ||||||||||||||||||||||||    
T  29200041 gtgattatgaaaggttaaacctgaaatgagaatg 29200074  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 283 - 361
Target Start/End: Original strand, 29200134 - 29200212
Alignment:
Q  283 tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaactcat 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29200134 tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaaataagttatatcaattaactcat 29200212  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19768314 - 19768368
Alignment:
Q  1 catgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 55  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19768314 catgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 19768368  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29199829 - 29199879
Alignment:
Q  1 catgcatgaatccatgtctctcttctttgggacttctcatgtataaatagg 51  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  29199829 catgcttgaatccatgactctcttctttaggacttctcatgtataaatagg 29199879  T

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Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 114 - 396
Target Start/End: Complemental strand, 37616860 - 37616579
Alignment:
Q  114 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggnnnnnnnngcatactattttccctagat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  37616860 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggttttttt-gcatactattttccctagat 37616762  T
Q  214 tgtgtgattatggaaggttaaacctgaaatgagaatggaaattaactctgtttatcttaaggaccatgatatctattggtatgttcaattatattatgca 313  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616761 tgtgtgattatggaaggttaaacttgaaatgagaatggcaattaactctgtttatcttaaggaccatgatatctattggtatgttcaattatattatgca 37616662  T
Q  314 gatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat 396  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616661 gatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat 37616579  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 585 - 712
Target Start/End: Complemental strand, 25901225 - 25901099
Alignment:
Q  585 tcttcttccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctctt 684  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| || || ||| ||||||||||||||||||||||       |||||    
T  25901225 tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt 25901127  T
Q  685 gagatttatctatattgaaattgttcac 712  Q
    |||||||||||| |||||||||||||||    
T  25901126 gagatttatctacattgaaattgttcac 25901099  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 1659881 - 1659810
Alignment:
Q  278 catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 349  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1659881 catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 1659810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 32226158 - 32226087
Alignment:
Q  278 catgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 349  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32226158 catgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 32226087  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37616973 - 37616919
Alignment:
Q  1 catgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 55  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37616973 catgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 37616919  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 25899478 - 25899421
Alignment:
Q  194 gcatactattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg 251  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  25899478 gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgg 25899421  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
Q  468 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 527  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  5478209 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 5478268  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 608
Target Start/End: Complemental strand, 50227416 - 50227374
Alignment:
Q  566 ggttcttatgggtaaattttcttcttccacttttatttgtttc 608  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  50227416 ggttcttatgggtaaagtttcttctttcacttttatttgtttc 50227374  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22083007 - 22083061
Alignment:
Q  1 catgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 55  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22083007 catgcatgaatccatgtctctcttctttaggacttctcatgtataaatagggacc 22083061  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
Q  468 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 527  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  2685103 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 2685044  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 708 - 758
Target Start/End: Complemental strand, 6174412 - 6174362
Alignment:
Q  708 ttcacttttctcgcctttcaacagagacaaaagttttcctgtgatgatgat 758  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  6174412 ttcacttttctcacctttcaacagagacaaaagttttccagtgatgatgat 6174362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 770534 - 770592
Alignment:
Q  119 tctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 177  Q
    ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  770534 tctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct 770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 468 - 527
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
Q  468 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga 527  Q
    |||||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  45008528 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 45008469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 51389526 - 51389463
Alignment:
Q  114 ctctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 177  Q
    |||| ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  51389526 ctctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct 51389463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 51389639 - 51389585
Alignment:
Q  1 catgcatgaatccatgtctctcttctttgggacttctcatgtataaatagggacc 55  Q
    ||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  51389639 catgcttgaatccatgaccctcttctttaggacttctcatgtataaatagggacc 51389585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 32663200 - 32663253
Alignment:
Q  198 actattttccctagattgtgtgattatggaaggttaaacctgaaatgagaatgg 251  Q
    |||||||||||| ||||||||||| | |||||||||| |||||| |||||||||    
T  32663200 actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatgg 32663253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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