View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18830_low_2 (Length: 365)

Name: NF18830_low_2
Description: NF18830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18830_low_2
NF18830_low_2
[»] chr7 (12 HSPs)
chr7 (4-344)||(6333900-6334243)
chr7 (34-344)||(6326444-6326763)
chr7 (15-97)||(6242322-6242406)
chr7 (126-179)||(6220817-6220869)
chr7 (286-335)||(42720892-42720941)
chr7 (117-181)||(6331386-6331449)
chr7 (286-342)||(38143231-38143287)
chr7 (279-334)||(3520345-3520400)
chr7 (117-145)||(6347385-6347413)
chr7 (279-335)||(16341497-16341553)
chr7 (267-335)||(20549780-20549848)
chr7 (279-335)||(44020976-44021032)
[»] scaffold0022 (1 HSPs)
scaffold0022 (267-342)||(90832-90907)
[»] chr6 (15 HSPs)
chr6 (269-335)||(33001291-33001357)
chr6 (287-332)||(26314639-26314684)
chr6 (270-332)||(30866149-30866211)
chr6 (267-335)||(426516-426584)
chr6 (267-335)||(7265595-7265663)
chr6 (267-335)||(7938105-7938173)
chr6 (267-335)||(32299264-32299332)
chr6 (285-335)||(11784218-11784268)
chr6 (286-335)||(7151420-7151469)
chr6 (286-335)||(9617442-9617491)
chr6 (286-335)||(24138434-24138483)
chr6 (286-343)||(33419181-33419238)
chr6 (286-322)||(4118348-4118384)
chr6 (287-335)||(9629392-9629440)
chr6 (265-309)||(21424830-21424874)
[»] chr3 (8 HSPs)
chr3 (275-335)||(4201393-4201453)
chr3 (267-335)||(39002021-39002089)
chr3 (273-335)||(7928445-7928507)
chr3 (269-335)||(8039837-8039903)
chr3 (269-335)||(10455781-10455847)
chr3 (273-331)||(25326421-25326479)
chr3 (286-331)||(29508452-29508497)
chr3 (267-335)||(17005621-17005689)
[»] scaffold2079 (1 HSPs)
scaffold2079 (1-75)||(528-603)
[»] chr8 (5 HSPs)
chr8 (286-341)||(12606825-12606880)
chr8 (285-335)||(12985399-12985449)
chr8 (286-335)||(14134707-14134756)
chr8 (267-320)||(29519184-29519237)
chr8 (286-334)||(31236580-31236628)
[»] chr2 (4 HSPs)
chr2 (267-333)||(30527599-30527665)
chr2 (286-335)||(34691807-34691856)
chr2 (286-335)||(34714219-34714268)
chr2 (267-335)||(18420436-18420504)
[»] chr5 (8 HSPs)
chr5 (286-335)||(23012410-23012459)
chr5 (286-341)||(12927662-12927717)
chr5 (267-309)||(7997194-7997236)
chr5 (286-335)||(22423814-22423863)
chr5 (286-322)||(15405070-15405106)
chr5 (267-335)||(17123037-17123105)
chr5 (279-335)||(32630737-32630793)
chr5 (279-335)||(38749565-38749621)
[»] chr4 (7 HSPs)
chr4 (286-335)||(21720509-21720558)
chr4 (284-328)||(18491888-18491932)
chr4 (286-330)||(44081584-44081628)
chr4 (273-335)||(29205439-29205501)
chr4 (286-335)||(5775360-5775409)
chr4 (285-342)||(21345528-21345585)
chr4 (286-343)||(33950144-33950201)
[»] chr1 (7 HSPs)
chr1 (286-335)||(16927187-16927236)
chr1 (267-335)||(6427339-6427407)
chr1 (267-322)||(5927355-5927410)
chr1 (284-333)||(5454127-5454176)
chr1 (286-330)||(16164322-16164366)
chr1 (271-335)||(38503313-38503377)
chr1 (267-335)||(46348385-46348453)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 4 - 344
Target Start/End: Original strand, 6333900 - 6334243
Alignment:
Q  4 ggaaaaagaggtatgacacaatttggatgagaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcgn 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     
T  6333900 ggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaatcgttttatacgatagtattcgattcaactttcattcgt 6333999  T
Q  104 nnnnnnnat--actcaatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcatttctaataattcaacgaccaat 201  Q
            |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6334000 ttttttttttgactcaatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcatttctaataattcaacgaccagt 6334099  T
Q  202 atatggagaagaatgatgagcaactgatgaaaatccatgaagcaagcacatatacatttatgaaaactgacacaccaacacggataataatttg-aaaaa 300  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6334100 atatggagaagaatgattagcaactgatgaaaatctatgaagcaagcacatatacatttatgaaaactgacacaccaacaaggataataatttgaaaaaa 6334199  T
Q  301 atcatataaataaatgtaattatatatgtcggtgtaagacacct 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6334200 atcatataaataaatgtaattatatatgtcggtgtaagacacct 6334243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 34 - 344
Target Start/End: Original strand, 6326444 - 6326763
Alignment:
Q  34 gaaagtggcccatttaaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcgnnnnnnnnat--------actcaatattggt 125  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |        |||||||||||||    
T  6326444 gaaagtgacccatt-aaacgtttaatacgaatcgttttatacgatagtattcgattgaactttcattcgttttttttttttttttggactcaatattggt 6326542  T
Q  126 ctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcat-----ttc--taataattcaacgaccaatatatggagaagaatgat 218  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||     |||  ||||||||||||||||||||||||||||||||||||    
T  6326543 ctttaatattttaaatgttt-gacattttttcaacctgtggatcttaggctcatgacatttcattaataattcaacgaccaatatatggagaagaatgat 6326641  T
Q  219 gagcaactgatgaaaatccatgaagcaagcacatatacatttatgaaaactgacacaccaacacggataataatttgaaaaaatcatataaataaatgta 318  Q
    |||||||| ||||||||| ||||||||    || ||||||||| |||||||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  6326642 gagcaactaatgaaaatctatgaagca----caaatacatttacgaaaactgacacaccaaccctgataataatttaaaaaaatcatataaataaatgta 6326737  T
Q  319 attatatatgtcggtgtaagacacct 344  Q
    ||||||||||||||||||||||||||    
T  6326738 attatatatgtcggtgtaagacacct 6326763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 6242406 - 6242322
Alignment:
Q  15 tatgacacaatttggatgagaaagtggcccatt-taaacgtttaatacgaa-tcgttttatacgatagtattcgattgaactttc 97  Q
    ||||| ||||||||||||||| |||| ||||||  |||||||||||||||| ||||||||||| |||||  ||||||||| ||||    
T  6242406 tatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttc 6242322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 6220869 - 6220817
Alignment:
Q  126 ctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcat 179  Q
    |||||||||||||||||||| |||||||||||||| |||| |||| ||||||||    
T  6220869 ctttaatattttaaatgttt-gacattttttcaacttgtggatctcaggctcat 6220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 42720941 - 42720892
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||| ||||    
T  42720941 taataatttgaaaaaatcacataattaaatgtaattatatgtgtcagtgt 42720892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 6331386 - 6331449
Alignment:
Q  117 aatattggtctttaatattttaaatgttttgacattttttcaacctgtgaatctgaggctcattt 181  Q
    ||||||||||||||||||||||||   ||||||| ||||||||| ||||||| ||||||| ||||    
T  6331386 aatattggtctttaatattttaaaatgtttgaca-tttttcaacttgtgaatttgaggctgattt 6331449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 38143231 - 38143287
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 342  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||| ||||| ||||||    
T  38143231 taataatttgaaaaaatcacataatttaatgtaattatatgtgttggtgtcagacac 38143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Complemental strand, 3520400 - 3520345
Alignment:
Q  279 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtg 334  Q
    |||| |||||| |||||| |||||||||||| | ||||||||||||| ||||||||    
T  3520400 acaccgataatcatttgagaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 6347385 - 6347413
Alignment:
Q  117 aatattggtctttaatattttaaatgttt 145  Q
    |||||||||||||||||||||||||||||    
T  6347385 aatattggtctttaatattttaaatgttt 6347413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 16341497 - 16341553
Alignment:
Q  279 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||| ||||||||||||| ||||||| |||| ||| ||||||||||| || ||||||    
T  16341497 acactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgt 16341553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 20549780 - 20549848
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| |||| | ||||||||||| |||||||  ||| | | ||||||||||| |||||||||    
T  20549780 actgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgt 20549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 44020976 - 44021032
Alignment:
Q  279 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||||||||||||||| | |||| | |||||||  |||| |||||||||    
T  44020976 acacggataataatttgaaaaaattacataattcaatgtaaccatatctgtcggtgt 44021032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 90832 - 90907
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 342  Q
    ||||||||||||||||   ||||||||||| |||||||||||| | | ||||||||||||||||| ||| ||||||    
T  90832 actgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagacac 90907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 33001357 - 33001291
Alignment:
Q  269 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||| || |||| | ||||||||||||||||||| |||| ||||||||||||||| |||||||||    
T  33001357 tgacacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattatatgtgtcggtgt 33001291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 26314684 - 26314639
Alignment:
Q  287 aataatttgaaaaaatcatataaataaatgtaattatatatgtcgg 332  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  26314684 aataatttgaaaaaatcatataattcaatgtaattatatatgtcgg 26314639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 332
Target Start/End: Complemental strand, 30866211 - 30866149
Alignment:
Q  270 gacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcgg 332  Q
    ||||||||||||| | ||||||||||| ||||||| |||| | ||||||||||||| ||||||    
T  30866211 gacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 426584 - 426516
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| || |||| | ||||||||||||||||||| |||| |||||||||||| |  |||||||||    
T  426584 actgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgt 426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 7265663 - 7265595
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | | ||||||||||| |||||||||    
T  7265663 actgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 7265595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 7938105 - 7938173
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| || |||| | |||||||||||||||||||||||| | | ||||||||||  |||||||||    
T  7938105 actgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgt 7938173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 32299264 - 32299332
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||||| | ||||||||||||| ||||||| |||| | |||||| |||||  |||||||||    
T  32299264 actgacacaccaaccctgataataatttgagaaaatcacataattcaatgtagttatacgtgtcggtgt 32299332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 11784268 - 11784218
Alignment:
Q  285 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||| ||||||| || ||| | |||||||||||||||||||||    
T  11784268 ataataatttgagaaaatcacatgaatcagtgtaattatatatgtcggtgt 11784218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 7151420 - 7151469
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||||||||||| |||| ||| ||||||||||| ||| |||||    
T  7151420 taataatttgaaaaaatcacataattaagtgtaattatatgtgttggtgt 7151469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 9617442 - 9617491
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| ||||||| |||| | ||||||||||||| |||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9617491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 24138434 - 24138483
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||||||||||||||| ||| |||| |||||| | |||||||    
T  24138434 taataatttgaaaaaatcatataattaagtgtatttatatgtatcggtgt 24138483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 33419181 - 33419238
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacc 343  Q
    ||||||||||||||| | |||||| | ||||||||||||| ||| ||||| |||||||    
T  33419181 taataatttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacacc 33419238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 4118384 - 4118348
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaatta 322  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  4118384 taataatttgaaaaaatcacataattaaatgtaatta 4118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 9629392 - 9629440
Alignment:
Q  287 aataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||| ||||||| |||| | ||||||||||||| |||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgt 9629440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 21424874 - 21424830
Alignment:
Q  265 aaactgacacaccaacacggataataatttgaaaaaatcatataa 309  Q
    |||||||||| ||||||| | ||||||||||||||||||| ||||    
T  21424874 aaactgacacgccaacaccgctaataatttgaaaaaatcacataa 21424830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 4201393 - 4201453
Alignment:
Q  275 accaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| | ||||||||||||||||||| |||| ||| ||||||||||||||| |||||    
T  4201393 accaacaccgttaataatttgaaaaaatcacataattaagtgtaattatatatgttggtgt 4201453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 39002021 - 39002089
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| ||| |||||  ||||||||||||||| |||| | |||||||||||||||||| ||||    
T  39002021 actgacacaccgacatggataggaatttgaaaaaatcacataattcaatgtaattatatatgtcagtgt 39002089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 7928445 - 7928507
Alignment:
Q  273 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||| |||| | ||||||||||||||||||| |||| | | ||||||||||| |||||||||    
T  7928445 acaccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatatgtgtcggtgt 7928507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 8039903 - 8039837
Alignment:
Q  269 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||| ||||||| | ||||||||||| ||||| |||||| | | ||||||||||| |||||||||    
T  8039903 tgacacgccaacaccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgt 8039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 10455781 - 10455847
Alignment:
Q  269 tgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||| ||||||| | ||||||| ||| |||||||||||| ||| ||||||||||| ||| |||||    
T  10455781 tgacacgccaacactgctaataatatgagaaaatcatataactaagtgtaattatatgtgttggtgt 10455847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 25326421 - 25326479
Alignment:
Q  273 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcg 331  Q
    |||||||||| ||||||||||| ||||||| |||||| | | |||||||||| ||||||    
T  25326421 acaccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcg 25326479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 29508452 - 29508497
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcg 331  Q
    |||||||||||||||||||||||| | | ||||||||||| |||||    
T  29508452 taataatttgaaaaaatcatataattcagtgtaattatatgtgtcg 29508497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 17005689 - 17005621
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||| |||||||||   ||||||||||| |||||||||||| | | ||||||||||  |||||||||    
T  17005689 actgactcaccaacaccactaataatttgataaaatcatataattcagtgtaattataagtgtcggtgt 17005621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2079 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 603 - 528
Alignment:
Q  1 catggaaaaagaggtatgacacaatttggatgagaaagtggcccatttaaacgtttaatacgaa-tcgttttatac 75  Q
    ||||||||| ||| ||||| |||||||| |||||| |||| |||||  |||||||||||||||| |||||||||||    
T  603 catggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatac 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 12606880 - 12606825
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagaca 341  Q
    ||||||||||| |||||||||||| | ||||||||||||| ||||||||| |||||    
T  12606880 taataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 12985399 - 12985449
Alignment:
Q  285 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||| ||||||| |||| | |||||||| ||||||||||||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgt 12985449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 14134707 - 14134756
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| ||||||| |||| | | |||||||||||||||||||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgt 14134756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 29519184 - 29519237
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaat 320  Q
    ||||||||  |||||| ||||||||||| |||||||||||||| | ||||||||    
T  29519184 actgacacgtcaacaccgataataattttaaaaaatcatataattcaatgtaat 29519237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 31236628 - 31236580
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtg 334  Q
    ||||||||||| ||||||| |||| | ||||||||||||| ||||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 30527665 - 30527599
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggt 333  Q
    ||||||||||| |||| | ||||||||||| |||||||||||| | | ||||||||||| |||||||    
T  30527665 actgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattatatgtgtcggt 30527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 34691856 - 34691807
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| |||||||||||| | | ||||||||||| |||||||||    
T  34691856 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34691807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 34714268 - 34714219
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| |||||||||||| | | ||||||||||| |||||||||    
T  34714268 taataatttgataaaatcatataattcagtgtaattatatgtgtcggtgt 34714219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 18420504 - 18420436
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | |||| |||||||  |||||||||    
T  18420504 actgacacgccaacactgctaataatttgagaaaatcacataattcaatgcaattataagtgtcggtgt 18420436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 23012459 - 23012410
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| |||||||||||| | ||||||||||||| |||||||||    
T  23012459 taataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgt 23012410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 12927662 - 12927717
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagaca 341  Q
    ||||||||||| |||||||||||| | | |||||||||||||||| |||| |||||    
T  12927662 taataatttgagaaaatcatataatttagtgtaattatatatgtcagtgtcagaca 12927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 7997236 - 7997194
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataa 309  Q
    |||||||| ||||||||||||||||||||| ||||| ||||||    
T  7997236 actgacacgccaacacggataataatttgagaaaatgatataa 7997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 22423863 - 22423814
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||    
T  22423863 taataatttgagaaaatcacataattcaatataattatatatgtcggtgt 22423814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 15405106 - 15405070
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaatta 322  Q
    |||||||||||||||||||||||| | ||||||||||    
T  15405106 taataatttgaaaaaatcatataattcaatgtaatta 15405070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 17123037 - 17123105
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| ||||||| | ||||||||||| ||||||| ||||  || |  ||||||||||||||||||    
T  17123037 actgacacgccaacaccgctaataatttgagaaaatcacataatcaagtacaattatatatgtcggtgt 17123105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 32630793 - 32630737
Alignment:
Q  279 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||| ||||||||||||| ||||| |||||| | ||||||||||||| |||| ||||    
T  32630793 acaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgt 32630737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 38749621 - 38749565
Alignment:
Q  279 acacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||| ||||||||||||||||||| | |||| | ||||||||||||| ||| |||||    
T  38749621 acaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 21720558 - 21720509
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| |||||||||||| | ||||||| |||||||||||||||    
T  21720558 taataatttgataaaatcatataatttaatgtaactatatatgtcggtgt 21720509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 18491932 - 18491888
Alignment:
Q  284 gataataatttgaaaaaatcatataaataaatgtaattatatatg 328  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||    
T  18491932 gataataatttaaaaaaatcatataatttaatgtaattatatatg 18491888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 44081628 - 44081584
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtc 330  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||    
T  44081628 taataatttgaaaaaatcatataatttaatgtaattatatgtgtc 44081584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 29205439 - 29205501
Alignment:
Q  273 acaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||| ||||||||||||||||||| |||| | | |||||||| |  |||||||||    
T  29205439 acaccaacacggctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgt 29205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 5775409 - 5775360
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||||||| ||||||| |||| ||| ||||||||||| |||||||||    
T  5775409 taataatttgagaaaatcacataattaagtgtaattatatgtgtcggtgt 5775360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 342
Target Start/End: Complemental strand, 21345585 - 21345528
Alignment:
Q  285 ataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacac 342  Q
    |||||||||||||||||| | |||| | |||||||| || ||||||||||| ||||||    
T  21345585 ataataatttgaaaaaataacataactcaatgtaatcatttatgtcggtgtcagacac 21345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 33950144 - 33950201
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgtaagacacc 343  Q
    ||||||||||| ||||||| |||| | |||||||| |||| ||||||||| |||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 16927236 - 16927187
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||||||||||||||||||| | | ||||||||||||||| |||||    
T  16927236 taataatttgaaaaaatcatataattcagtgtaattatatatgttggtgt 16927187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 6427339 - 6427407
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| ||||||| | ||||||||||| ||||||| |||| | ||||||||||||| ||| |||||    
T  6427339 actgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgt 6427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 5927410 - 5927355
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaatta 322  Q
    |||||||| | ||||| | |||||||||||||||||||||||| | ||||||||||    
T  5927410 actgacacgctaacactgctaataatttgaaaaaatcatataatttaatgtaatta 5927355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 5454176 - 5454127
Alignment:
Q  284 gataataatttgaaaaaatcatataaataaatgtaattatatatgtcggt 333  Q
    |||| |||||||||||||||| |||| ||||| |||||||||||| ||||    
T  5454176 gatattaatttgaaaaaatcacataattaaatataattatatatgccggt 5454127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 16164366 - 16164322
Alignment:
Q  286 taataatttgaaaaaatcatataaataaatgtaattatatatgtc 330  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||||    
T  16164366 taataatttgaaaaaatcacataatttaatgtaattatatgtgtc 16164322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 38503313 - 38503377
Alignment:
Q  271 acacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    ||||||| |||| | ||||||||||| |||||||||||  | | ||||||||||| |||||||||    
T  38503313 acacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgt 38503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 46348453 - 46348385
Alignment:
Q  267 actgacacaccaacacggataataatttgaaaaaatcatataaataaatgtaattatatatgtcggtgt 335  Q
    |||||||| || |||| | |||||||||||||||||||||||| | | |||||||| |  |||||||||    
T  46348453 actgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgt 46348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University