View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18830_low_3 (Length: 352)
Name: NF18830_low_3
Description: NF18830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18830_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 7768908 - 7769232
Alignment:
| Q |
17 |
attctggtagagtgaaatatgttgtttttaacactttttctttgtacaatgaaattaatgacttttacctatatttttctattgtgaatctactatgtac |
116 |
Q |
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| T |
7768908 |
attctggtaaagtgaaatatgttgtttttaacactttttcttagtacaatgaaattaatgacttttacctatatttttctattgtgaatctactatgtac |
7769007 |
T |
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| Q |
117 |
ttcaagacatggtagaatttacctatattcttacaaggaaattcacaatgaaattaatctcttgattggggaaaaatacaatactaaagtcattcaccta |
216 |
Q |
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| T |
7769008 |
ttcaagacatggtagaatttacct-------tacaaggaaattcataatgaaattaatctcttgattggggaaaaattcaatactaaagtcattcaccta |
7769100 |
T |
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| Q |
217 |
ttttgaattttctgaattggcaaaactgtctaaaattgtaaaatgttattcaaaataatctctctattaccttccatcgttagaaattatgatgtgacac |
316 |
Q |
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| T |
7769101 |
ttttgaattttatgaattggcaaaactgtctaaaattgtaaaatgttattcaaaataatctctctattacctttcatcgttagaaattatgatg----ac |
7769196 |
T |
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| Q |
317 |
gttaacctttcgtatcgaaattacatggatttcatt |
352 |
Q |
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| T |
7769197 |
gttaacctttcgtatcgaaattacatggagttcatt |
7769232 |
T |
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