View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18830_low_4 (Length: 345)

Name: NF18830_low_4
Description: NF18830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18830_low_4
NF18830_low_4
[»] chr7 (2 HSPs)
chr7 (17-326)||(1808181-1808491)
chr7 (37-105)||(46987086-46987149)
[»] chr5 (4 HSPs)
chr5 (35-105)||(6624774-6624839)
chr5 (30-70)||(18619029-18619069)
chr5 (35-107)||(32200443-32200510)
chr5 (35-103)||(37932328-37932391)
[»] chr8 (2 HSPs)
chr8 (35-107)||(11708984-11709051)
chr8 (35-102)||(13575287-13575349)
[»] chr4 (5 HSPs)
chr4 (31-70)||(21317366-21317405)
chr4 (37-107)||(19908692-19908757)
chr4 (35-104)||(38453263-38453327)
chr4 (35-103)||(20799394-20799457)
chr4 (35-107)||(22630356-22630423)
[»] chr1 (5 HSPs)
chr1 (35-102)||(7484691-7484757)
chr1 (35-112)||(21400014-21400086)
chr1 (36-105)||(47528445-47528509)
chr1 (35-107)||(17139513-17139580)
chr1 (38-102)||(34083637-34083700)
[»] chr2 (5 HSPs)
chr2 (35-105)||(7206123-7206188)
chr2 (35-104)||(20565074-20565138)
chr2 (27-103)||(24593366-24593437)
chr2 (35-107)||(31815883-31815950)
chr2 (34-70)||(43484693-43484729)
[»] chr6 (2 HSPs)
chr6 (36-69)||(15869132-15869165)
chr6 (37-105)||(655747-655810)
[»] chr3 (1 HSPs)
chr3 (31-107)||(10922304-10922375)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 1808181 - 1808491
Alignment:
Q  17 aatatatgttataagttttcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgacaccacnnnn 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||        
T  1808181 aatacatgttataagttttcgtgagcttagctcagttggcagtgacaatgcatatcataatatatgcaagttccgaggttcgaaccccggcaccacaaaa 1808280  T
Q  117 nnnnt-taatacatgctataagttagtggccaaattacatgtgacactgtaaaccttgataatgcagcttttgtttgcagataaatgtggtaaaaatgca 215  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808281 aaataataatacatgctataagttagtggccaaattacatgtgacactgtaaaccttgataatgcagcttttgtttgcagataaatgtggtaaaaatgca 1808380  T
Q  216 tacacaactagattactttgaagagtatcaacaacgattaacgactttaatcggcggttcgcggactagaagacttgttaataaagcattgtttcttatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808381 tacacaactagattactttgaagagtatcaacaacgattaacgactttaatcggcggttcgcggactagaagacttgttaataaagcattgtttcttatg 1808480  T
Q  316 acagttggagg 326  Q
    |||||||||||    
T  1808481 acagttggagg 1808491  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 46987086 - 46987149
Alignment:
Q  37 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 105  Q
    ||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||||    
T  46987086 gtgagcttagctcagttggtaaggacaatgcata-----atatatgcaaggtccggggttcgaaccccg 46987149  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 6624774 - 6624839
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 105  Q
    |||||||||||||||||||||||  |||||||||||     ||||||||||| |||| |||||||||||||    
T  6624774 tcgtgagcttagctcagttggcatggacaatgcata-----atatatgcaaggtccggggttcgaaccccg 6624839  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 18619029 - 18619069
Alignment:
Q  30 agttttcgtgagcttagctcagttggcagtgacaatgcata 70  Q
    |||| ||||||||||||||||| |||||| |||||||||||    
T  18619029 agttctcgtgagcttagctcagctggcagagacaatgcata 18619069  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 32200510 - 32200443
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    |||||||||||||||||||| ||| |||||||||||     ||||||||||| |||| ||||| | |||||||    
T  32200510 tcgtgagcttagctcagttgacagggacaatgcata-----atatatgcaaggtccggggttcaagccccgac 32200443  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 37932328 - 37932391
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccc 103  Q
    ||||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||    
T  37932328 tcgtgagcttagctcagttggtatggacaatgcata-----atatatgcaaggtccggggttcgaaccc 37932391  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 11708984 - 11709051
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| ||||| |||| |||||||||    
T  11708984 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccgaagttcaaaccccgac 11709051  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 13575287 - 13575349
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 102  Q
    ||||||| ||||||||||||| || |||||||||||     | |||||||||||||||||||||||||    
T  13575287 tcgtgagtttagctcagttggtagggacaatgcata-----acatatgcaagttccgaggttcgaacc 13575349  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 21317405 - 21317366
Alignment:
Q  31 gttttcgtgagcttagctcagttggcagtgacaatgcata 70  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  21317405 gttttcgtgagcttagctcagttggtagagacaatgcata 21317366  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 19908692 - 19908757
Alignment:
Q  37 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    ||||||||| ||||||||| |  |||||||||||     ||||||||||| ||||||||||||||||||||    
T  19908692 gtgagcttaactcagttggtaaggacaatgcata-----atatatgcaaggtccgaggttcgaaccccgac 19908757  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38453263 - 38453327
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacccc 104  Q
    |||||||||||||||||||||||  |||||||||||     ||||||||||| |||  ||||||||||||    
T  38453263 tcgtgagcttagctcagttggcatggacaatgcata-----atatatgcaaggtccagggttcgaacccc 38453327  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 20799457 - 20799394
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccc 103  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||    
T  20799457 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaaccc 20799394  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 22630423 - 22630356
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    ||||||| ||| ||||||||| ||||||||||||||     ||||||||||| || ||||||| |||||||||    
T  22630423 tcgtgagattatctcagttggtagtgacaatgcata-----atatatgcaaggtctgaggttcaaaccccgac 22630356  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 7484757 - 7484691
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 102  Q
    ||||||||||||||||| ||| || |||||||||||  || ||||||||||| |||||||||| ||||    
T  7484757 tcgtgagcttagctcagctggtagagacaatgcataatat-atatatgcaaggtccgaggttcaaacc 7484691  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 21400086 - 21400014
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgacaccac 112  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| ||   ||||||||||| ||||||||    
T  21400086 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtcttgggttcgaaccctgacaccac 21400014  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 47528509 - 47528445
Alignment:
Q  36 cgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 105  Q
    |||||||||||||||||||| |  |||||||||||     ||||| ||||| ||||||||||||||||||    
T  47528509 cgtgagcttagctcagttggtaaggacaatgcata-----atatacgcaaggtccgaggttcgaaccccg 47528445  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 17139580 - 17139513
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    ||||||||||||||||||||| || |||||||||||     |||||| |||| |||| ||||| |||||||||    
T  17139580 tcgtgagcttagctcagttggtagggacaatgcata-----atatattcaaggtccggggttcaaaccccgac 17139513  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 34083700 - 34083637
Alignment:
Q  38 tgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacc 102  Q
    |||||||| ||||||||| || |||||||||||| || ||||||| ||| |||| ||||||||||    
T  34083700 tgagcttaactcagttggtagggacaatgcatat-ataatatatgtaaggtccggggttcgaacc 34083637  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 7206123 - 7206188
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 105  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||||||||  |||||||    
T  7206123 tcgtgagcttagctcagttggtagagacaatgcata-----atatatgcaaggtccgaggtttaaaccccg 7206188  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 20565138 - 20565074
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaacccc 104  Q
    ||||||||||||||||||||| || |||||||||||     ||||||||||| |||| ||||| ||||||    
T  20565138 tcgtgagcttagctcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaacccc 20565074  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 24593366 - 24593437
Alignment:
Q  27 ataagttttcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccc 103  Q
    |||||| | |||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||    
T  24593366 ataagtctccgtgagcttagctcagttggtaaggacaatgcata-----atatatgcaaggtccggggttcgaaccc 24593437  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 31815950 - 31815883
Alignment:
Q  35 tcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    ||||||||||| ||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||||||    
T  31815950 tcgtgagcttaactcagttggtagggacaatgcata-----atatatgcaaggtccggggttcaaaccccgac 31815883  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 43484729 - 43484693
Alignment:
Q  34 ttcgtgagcttagctcagttggcagtgacaatgcata 70  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  43484729 ttcgtaagcttagctcagttggcagagacaatgcata 43484693  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 15869165 - 15869132
Alignment:
Q  36 cgtgagcttagctcagttggcagtgacaatgcat 69  Q
    |||||||||||||||||||||||||||| |||||    
T  15869165 cgtgagcttagctcagttggcagtgacattgcat 15869132  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 655810 - 655747
Alignment:
Q  37 gtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccg 105  Q
    ||||||||||||||||||| |  |||||||||||     ||||||||||| |||| |||||||||||||    
T  655810 gtgagcttagctcagttggtatcgacaatgcata-----atatatgcaaggtccggggttcgaaccccg 655747  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 10922375 - 10922304
Alignment:
Q  31 gttttcgtgagcttagctcagttggcagtgacaatgcatatcatgatatatgcaagttccgaggttcgaaccccgac 107  Q
    |||| |||||||||| ||||||||| || |||||||||||     ||||||||||| |||| ||||| |||||||||    
T  10922375 gtttgcgtgagcttaactcagttggtagggacaatgcata-----atatatgcaagatccggggttcaaaccccgac 10922304  T

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