View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18830_low_9 (Length: 218)

Name: NF18830_low_9
Description: NF18830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18830_low_9
NF18830_low_9
[»] chr2 (7 HSPs)
chr2 (43-218)||(10366199-10366374)
chr2 (1-42)||(34520598-34520639)
chr2 (3-37)||(17537793-17537827)
chr2 (1-42)||(23719979-23720020)
chr2 (1-42)||(24107651-24107692)
chr2 (1-44)||(6978116-6978159)
chr2 (1-31)||(10359432-10359462)
[»] chr3 (14 HSPs)
chr3 (1-44)||(46413170-46413213)
chr3 (1-44)||(49274711-49274754)
chr3 (1-37)||(34470943-34470979)
chr3 (1-44)||(11377863-11377906)
chr3 (1-44)||(50458132-50458175)
chr3 (1-44)||(51012168-51012211)
chr3 (6-44)||(14632759-14632797)
chr3 (1-42)||(30193829-30193870)
chr3 (1-37)||(10052239-10052275)
chr3 (1-44)||(44928752-44928795)
chr3 (1-42)||(18441668-18441709)
chr3 (1-42)||(19486742-19486783)
chr3 (5-42)||(42322294-42322331)
chr3 (1-37)||(47759834-47759870)
[»] chr1 (5 HSPs)
chr1 (1-44)||(49260562-49260605)
chr1 (1-42)||(37779432-37779473)
chr1 (1-37)||(15355667-15355703)
chr1 (1-37)||(35186292-35186328)
chr1 (1-44)||(40532260-40532303)
[»] chr4 (9 HSPs)
chr4 (1-42)||(51026671-51026712)
chr4 (1-37)||(47873324-47873360)
chr4 (1-44)||(43888373-43888416)
chr4 (6-44)||(17054305-17054343)
chr4 (1-33)||(2774314-2774346)
chr4 (1-37)||(21170770-21170806)
chr4 (1-37)||(36775365-36775401)
chr4 (1-37)||(49790813-49790849)
chr4 (1-37)||(49816297-49816333)
[»] chr8 (4 HSPs)
chr8 (1-44)||(26487740-26487783)
chr8 (1-44)||(42167819-42167862)
chr8 (1-42)||(19241540-19241581)
chr8 (1-42)||(19314724-19314765)
[»] chr7 (4 HSPs)
chr7 (1-44)||(22292130-22292173)
chr7 (7-44)||(17184483-17184520)
chr7 (3-44)||(20876929-20876970)
chr7 (1-42)||(43350274-43350315)
[»] chr6 (1 HSPs)
chr6 (1-42)||(12398081-12398122)
[»] chr5 (3 HSPs)
chr5 (1-42)||(1696094-1696135)
chr5 (1-37)||(6792329-6792365)
chr5 (1-37)||(7484375-7484411)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 10366199 - 10366374
Alignment:
Q  43 gagttaacgagtttcacactaattgttagtgagaacttcagttcaatgtctcgatagaataattcaaatgacttacttgcatgttactaaagagagataa 142  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366199 gagttaatgagttttacactaattgttagtgagaacttcagttcaatgtctggatagaataattcaaatgacttacttgcatgttactaaagagagataa 10366298  T
Q  143 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366299 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttt 10366374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34520598 - 34520639
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  34520598 gtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 34520639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 17537793 - 17537827
Alignment:
Q  3 gacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||||||||||||    
T  17537793 gacgacaagaagaaagaaaaatcaccgatgacatg 17537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23719979 - 23720020
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  23719979 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 23720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24107651 - 24107692
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  24107651 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 24107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 6978159 - 6978116
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||    
T  6978159 gtgacgacaagaagaaagaaaaattgccgatgacatggcacgga 6978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10359432 - 10359462
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgat 31  Q
    |||||||||||||||||||||||||||||||    
T  10359432 gtgacgacaagaagaaagaaaaatcaccgat 10359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 46413170 - 46413213
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  46413170 gtgacgacaagaagaaagaaaaatcactgatgacatgacacgga 46413213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49274754 - 49274711
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  49274754 gtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34470943 - 34470979
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34470943 gtgacgacaagaagaaagaaaaatcaccgatgacatg 34470979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11377863 - 11377906
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  11377863 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 11377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50458132 - 50458175
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  50458132 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 50458175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51012168 - 51012211
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  51012168 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 51012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 14632797 - 14632759
Alignment:
Q  6 gacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  14632797 gacaagaagaaataaaaatcaccgatgacatgacacgga 14632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30193870 - 30193829
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||| |||||||||| |||||    
T  30193870 gtgacgacaagaagaaagaaaaatcgccgatgacattacacg 30193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10052239 - 10052275
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10052239 gtgacgacaagaagaaagaaaaatcactgatgacatg 10052275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44928795 - 44928752
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    |||||||||||||||||||||||||  |||||||||| ||||||    
T  44928795 gtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 44928752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18441709 - 18441668
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    |||| |||||||||||||||||||| || |||||||||||||    
T  18441709 gtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 18441668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19486783 - 19486742
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    |||| |||||||||||||||||||| || |||||||||||||    
T  19486783 gtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 19486742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 42322294 - 42322331
Alignment:
Q  5 cgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  42322294 cgacaagaagaaagaaaaatcgccgatgacatggcacg 42322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47759834 - 47759870
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    ||||||||||||||||||||||| | |||||||||||    
T  47759834 gtgacgacaagaagaaagaaaaaacgccgatgacatg 47759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 49260562 - 49260605
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  49260562 gtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37779473 - 37779432
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  37779473 gtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 37779432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15355667 - 15355703
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  15355667 gtgacgacaagaagaaagaaaaatcaccgatgacatg 15355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35186328 - 35186292
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35186328 gtgacgacaagaagaaagaaaaatcaccgatgacatg 35186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40532260 - 40532303
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||    
T  40532260 gtgacgataagaagaaagaaaaatcgccgatgacatggcacgga 40532303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 51026671 - 51026712
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  51026671 gtgacgacaagaagaaagaaaaatcaccgatgacatggcacg 51026712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47873360 - 47873324
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  47873360 gtgacgacaagaagaaagaaaaatcaccgatgacatg 47873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43888373 - 43888416
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    |||||||||||||||||||||||||  |||||||||| ||||||    
T  43888373 gtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 43888416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 17054305 - 17054343
Alignment:
Q  6 gacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  17054305 gacaagaagaaagaaaaatcgccgatgacatggcacgga 17054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2774346 - 2774314
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatga 33  Q
    ||||||||||||||||||||||||| |||||||    
T  2774346 gtgacgacaagaagaaagaaaaatcgccgatga 2774314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21170806 - 21170770
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  21170806 gtgatgacaagaagaaagaaaaatcgccgatgacatg 21170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36775365 - 36775401
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  36775365 gtgacaacaagaagaaagaaaaatcactgatgacatg 36775401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49790813 - 49790849
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||||||||||||||||||||||||  ||||||||||    
T  49790813 gtgacgacaagaagaaagaaaaatcgtcgatgacatg 49790849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49816297 - 49816333
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  49816297 gtgatgacaagaagaaagaaaaatcgccgatgacatg 49816333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26487783 - 26487740
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  26487783 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 26487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42167819 - 42167862
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  42167819 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 42167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19241540 - 19241581
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  19241540 gtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19314724 - 19314765
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  19314724 gtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19314765  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22292173 - 22292130
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  22292173 gtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 22292130  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 17184520 - 17184483
Alignment:
Q  7 acaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  17184520 acaagaagaaagaaaaatcgccgatgacatggcacgga 17184483  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 20876929 - 20876970
Alignment:
Q  3 gacgacaagaagaaagaaaaatcaccgatgacatgacacgga 44  Q
    ||||||||||||||||||||||| | ||||||||| ||||||    
T  20876929 gacgacaagaagaaagaaaaatcgctgatgacatggcacgga 20876970  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43350274 - 43350315
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  43350274 gtgacgacaagaagaaagaaatatcgccgatgacatggcacg 43350315  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12398122 - 12398081
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  12398122 gtgacgacaagaagaaagaaaaatcacggatgacatggcacg 12398081  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1696135 - 1696094
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 42  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  1696135 gtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 1696094  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6792329 - 6792365
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  6792329 gtgacaacaaaaagaaagaaaaatcaccgatgacatg 6792365  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7484375 - 7484411
Alignment:
Q  1 gtgacgacaagaagaaagaaaaatcaccgatgacatg 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  7484375 gtgacgacaagaagaaagaaaaattgccgatgacatg 7484411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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