View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18831_low_1 (Length: 730)

Name: NF18831_low_1
Description: NF18831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18831_low_1
NF18831_low_1
[»] chr2 (5 HSPs)
chr2 (103-712)||(423667-424270)
chr2 (542-607)||(42868540-42868605)
chr2 (567-606)||(10619295-10619334)
chr2 (542-617)||(41241201-41241276)
chr2 (544-589)||(23974587-23974632)
[»] chr7 (4 HSPs)
chr7 (542-607)||(46078073-46078138)
chr7 (566-615)||(11700337-11700386)
chr7 (543-589)||(33128684-33128730)
chr7 (545-662)||(420289-420406)
[»] chr3 (3 HSPs)
chr3 (543-661)||(20880404-20880521)
chr3 (545-607)||(30956705-30956767)
chr3 (545-607)||(30972517-30972579)
[»] chr4 (4 HSPs)
chr4 (548-656)||(9760372-9760480)
chr4 (545-606)||(13216284-13216345)
chr4 (545-656)||(50681119-50681230)
chr4 (544-598)||(49940260-49940314)
[»] chr1 (4 HSPs)
chr1 (542-661)||(37631584-37631703)
chr1 (545-642)||(30581992-30582090)
chr1 (544-640)||(7862006-7862102)
chr1 (553-607)||(47432033-47432087)
[»] chr6 (1 HSPs)
chr6 (543-656)||(31623487-31623600)
[»] chr8 (1 HSPs)
chr8 (546-661)||(35534638-35534750)
[»] chr5 (1 HSPs)
chr5 (545-582)||(32009919-32009956)


Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 103 - 712
Target Start/End: Complemental strand, 424270 - 423667
Alignment:
Q  103 caccaccgcctccatctgatcatgatgattccgacgacgatgactccgatgacagtgtagaagtttccgactatgattccatttccgaagacgaggtatt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  424270 caccaccgcctccatctgatcatgatgattccgacgacgatgactccgatgacagtgtagaagtttccgactatgattccatttccgaagacgaggtatt 424171  T
Q  203 actattacatcttcactcactttctccattcacttctttactcatgcttaattcattcttctgcttgcttgttcgttgcaggactcttctgcagatagca 302  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  424170 actattatatcttcactcactttctccattcacttctttactcatgcttaattcattcttctgcttgcttgttcgttgcaggactcttctgcagatagca 424071  T
Q  303 tcgacgatgacgactcttctgattctgattctgactctgattctaaatctgaattagaagatgaagaaggtgcttcacctactactcatcataatgcctc 402  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  424070 tcgacgatgacgactcttctgattctga------ctctgattctaaatctgaattagaagatgaagaaggtgcttcacctactactcatcataatgcctc 423977  T
Q  403 tgacgattctgactctcaagacgaggaggaggtcagcttcatcactttcttttctcaattttcaacaacttctcaagacatgtttataacctcttttcac 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  423976 tgacgattctgactctcaagacgaggaggaggtcagcttcatcactttcttttctcaattttcaacaacttctcaagacatgtttataacctcttttcac 423877  T
Q  503 cttatttagggcctgtttggataaatactagcacaagcacgcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattg 602  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  423876 catatttagggcctgtttggataaatactagcacaagcacgcttatgcataagcttccgcaagttatttttatagaaaaagataaaactaagttatattg 423777  T
Q  603 tttttatgtatgctaaaagcggtttcaatcagctatattggacaacttatgaaagtaagtnnnnnnnnnncttgtaaaaattgtcataagctgttttcat 702  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  423776 tttttatgtatgctaaaagctgtttcaatcagctatattggacaacttatgaaagtaagtaaaaaaaaaacttgtaaaaattgtcataagctgttttcat 423677  T
Q  703 tagctcttcc 712  Q
    ||||||||||    
T  423676 tagctcttcc 423667  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 607
Target Start/End: Complemental strand, 42868605 - 42868540
Alignment:
Q  542 cgcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgttttt 607  Q
    |||||||||||||| ||||  ||| |||||| ||||||||||||||||  |||||| |||||||||    
T  42868605 cgcttatgcataagtttacataagctattttcatagaaaaagataaaataaagttaaattgttttt 42868540  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Complemental strand, 10619334 - 10619295
Alignment:
Q  567 tatttttatagaaaaagataaaactaagttatattgtttt 606  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  10619334 tatttttatagaaaaagataaaacaaagttaaattgtttt 10619295  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 617
Target Start/End: Complemental strand, 41241276 - 41241201
Alignment:
Q  542 cgcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgcta 617  Q
    |||||||| ||||||||||  ||| ||||| ||||| |||||||||||  |||||| ||||||||| | |||||||    
T  41241276 cgcttatggataagcttacataagctatttctataggaaaagataaaatgaagttaaattgtttttgtatatgcta 41241201  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 544 - 589
Target Start/End: Complemental strand, 23974632 - 23974587
Alignment:
Q  544 cttatgcataagcttacgcaagttatttttatagaaaaagataaaa 589  Q
    |||||||||||||||||  ||| |||||||||||||||||| ||||    
T  23974632 cttatgcataagcttacttaagctatttttatagaaaaagacaaaa 23974587  T

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Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 542 - 607
Target Start/End: Original strand, 46078073 - 46078138
Alignment:
Q  542 cgcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgttttt 607  Q
    |||||||| ||||||||||  |||||||||||||||||||||||||||| |||||| |||||||||    
T  46078073 cgcttatgtataagcttacataagttatttttatagaaaaagataaaacaaagttaaattgttttt 46078138  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 566 - 615
Target Start/End: Complemental strand, 11700386 - 11700337
Alignment:
Q  566 ttatttttatagaaaaagataaaactaagttatattgtttttatgtatgc 615  Q
    ||||||||||||||||||||||||  |||||| ||||||||||| |||||    
T  11700386 ttatttttatagaaaaagataaaataaagttacattgtttttatatatgc 11700337  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 33128684 - 33128730
Alignment:
Q  543 gcttatgcataagcttacgcaagttatttttatagaaaaagataaaa 589  Q
    ||||||||||||||||||  | |||||||||||||||| ||||||||    
T  33128684 gcttatgcataagcttacttacgttatttttatagaaagagataaaa 33128730  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 662
Target Start/End: Original strand, 420289 - 420406
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattgga 644  Q
    ||||| |||||||| |  ||| ||| ||||||| |||||||||||  | |||  ||||||||| | ||||||| |||  |||||  | ||||||||||||    
T  420289 ttatgtataagcttgcataagctatgtttatagcaaaagataaaataatgttcaattgtttttgtatatgctataagttgtttccgtaagctatattgga 420388  T
Q  645 caacttatgaaagtaagt 662  Q
     ||||||||||| |||||    
T  420389 gaacttatgaaaataagt 420406  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 661
Target Start/End: Original strand, 20880404 - 20880521
Alignment:
Q  543 gcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattg 642  Q
    ||||||| ||||||||||  ||| ||||||||||| ||| |||||||| |||||| ||||||||| | ||||||| || | ||||  |  ||||||||||    
T  20880404 gcttatgtataagcttacataagctatttttatagcaaatgataaaac-aagttaaattgtttttgtatatgctataaactgtttttaaaagctatattg 20880502  T
Q  643 gacaacttatgaaagtaag 661  Q
    || ||||||||||| ||||    
T  20880503 gagaacttatgaaaataag 20880521  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 607
Target Start/End: Complemental strand, 30956767 - 30956705
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgttttt 607  Q
    ||||||||||||||||  ||| ||||| ||||| |||||||||||  |||||| |||||||||    
T  30956767 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgttttt 30956705  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 607
Target Start/End: Complemental strand, 30972579 - 30972517
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgttttt 607  Q
    ||||||||||||||||  ||| ||||| ||||| |||||||||||  |||||| |||||||||    
T  30972579 ttatgcataagcttacataagctatttctatagcaaaagataaaataaagttaaattgttttt 30972517  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 548 - 656
Target Start/End: Original strand, 9760372 - 9760480
Alignment:
Q  548 tgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattggacaa 647  Q
    ||||||||||| |  ||||||||||||| |||||||||||||  |||||| ||| |||||   ||||||| |||  ||||  || |||||||||||| ||    
T  9760372 tgcataagctttcataagttatttttattgaaaaagataaaataaagttaaattcttttttaatatgctataagttgtttttataagctatattggagaa 9760471  T
Q  648 cttatgaaa 656  Q
    |||||||||    
T  9760472 cttatgaaa 9760480  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 606
Target Start/End: Complemental strand, 13216345 - 13216284
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttt 606  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||  |||||| || |||||    
T  13216345 ttatgcataaacttacacaagttatttttatagcaaaagataaaataaagttaaatcgtttt 13216284  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 656
Target Start/End: Complemental strand, 50681230 - 50681119
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattgga 644  Q
    ||||| ||||||||||  ||| ||||||||||| | |||||||||  | |||| ||||||||| | ||||||| |||  ||||  || ||||||||||||    
T  50681230 ttatgtataagcttacaaaagctatttttataggataagataaaataatgttaaattgtttttgtatatgctataagttgtttatataagctatattgga 50681131  T
Q  645 caacttatgaaa 656  Q
     || ||||||||    
T  50681130 gaaattatgaaa 50681119  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 49940314 - 49940260
Alignment:
Q  544 cttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttat 598  Q
    ||||||||||||| |||| ||| |||||||||||||||| || ||| ||||||||    
T  49940314 cttatgcataagcatacgaaagctatttttatagaaaaacatcaaattaagttat 49940260  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 661
Target Start/End: Complemental strand, 37631703 - 37631584
Alignment:
Q  542 cgcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatatt 641  Q
    ||||||| |||||||||||  ||| ||| |||||||| ||||||||||  ||| || ||||||||| |||||| ||  ||| ||||   | |||||||||    
T  37631703 cgcttatacataagcttacataagctatctttatagagaaagataaaatgaagctaaattgtttttgtgtatgatattagctgtttttgtaagctatatt 37631604  T
Q  642 ggacaacttatgaaagtaag 661  Q
    ||| ||||||||||| ||||    
T  37631603 ggagaacttatgaaaataag 37631584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 642
Target Start/End: Complemental strand, 30582090 - 30581992
Alignment:
Q  545 ttatgcataa-gcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattg 642  Q
    |||||||||| ||||||  ||| |||||||||||||||||||||||  ||||||  |||||||| | ||||||| |||| ||||  || ||||||||||    
T  30582090 ttatgcataaagcttacataaggtatttttatagaaaaagataaaataaagttaacttgtttttgtatatgctacaagctgtttttataagctatattg 30581992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 640
Target Start/End: Original strand, 7862006 - 7862102
Alignment:
Q  544 cttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatat 640  Q
    |||||||||||||||    ||| |||||||||||||||||||||||  | | || ||||||||| | ||||||| |||| ||||| || ||||||||    
T  7862006 cttatgcataagctttgataagctatttttatagaaaaagataaaatgatggtaaattgtttttgtctatgctataagctgtttctataagctatat 7862102  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 553 - 607
Target Start/End: Original strand, 47432033 - 47432087
Alignment:
Q  553 aagcttacgcaagttatttttatagaaaaagataaaactaagttatattgttttt 607  Q
    ||||||||  ||| |||||||||||||||||||||||  |||||| |||||||||    
T  47432033 aagcttacataagctatttttatagaaaaagataaaataaagttaaattgttttt 47432087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 656
Target Start/End: Original strand, 31623487 - 31623600
Alignment:
Q  543 gcttatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattg 642  Q
    ||||||||||||||||||   || |||||||||||||||||||||||  | |||| |||| | || ||||||||| |||| ||||  ||   ||||||||    
T  31623487 gcttatgcataagcttacattagctatttttatagaaaaagataaaatgacgttaaattgctcttgtgtatgctataagctgtttttatacactatattg 31623586  T
Q  643 gacaacttatgaaa 656  Q
    || |||||| ||||    
T  31623587 gagaacttaagaaa 31623600  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 546 - 661
Target Start/End: Complemental strand, 35534750 - 35534638
Alignment:
Q  546 tatgcataagcttacgcaagttatttttatagaaaaagataaaactaagttatattgtttttatgtatgctaaaagcggtttcaatcagctatattggac 645  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||  |||||| ||||||||  |||||| || | |  ||||  || || |||||||||     
T  35534750 tatgcataagcttacataagatatttttatag-aaaagataaaataaagttaaattgtttt--tgtatgttatatgttgttttcataagttatattggag 35534654  T
Q  646 aacttatgaaagtaag 661  Q
    ||||||||||||||||    
T  35534653 aacttatgaaagtaag 35534638  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 582
Target Start/End: Original strand, 32009919 - 32009956
Alignment:
Q  545 ttatgcataagcttacgcaagttatttttatagaaaaa 582  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  32009919 ttatgcataagcttacgtaagctatttttatagaaaaa 32009956  T

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