View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18831_low_2 (Length: 562)
Name: NF18831_low_2
Description: NF18831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18831_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 294 - 544
Target Start/End: Original strand, 43282898 - 43283148
Alignment:
| Q |
294 |
tcttaaccttgctatatattcttacaagtcagaggtagtagaacatactgcacaagtacaagtcagtaattgagattaaacatgattaacaagcttccta |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43282898 |
tcttaaccttgctatatattcttacaagtcagaggtagtagaacatactgcacaagtacaagtcagtaattgagattaaacatgattaacaagcttccta |
43282997 |
T |
|
| Q |
394 |
gctagctcgttcggaaaggaggacgaggaggtggagaaccccaaaacacaacagagctttgatatagaactttactacacattgtataggctggtgacta |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43282998 |
gctagctcgttcggaaaggaggacgaggaggtggagaaccccaaaacacaacagagctttgatatagaactttactacacattgtataggctggtgacta |
43283097 |
T |
|
| Q |
494 |
aaaatacaaattaaactattccatagttgaagaaccagcaaactgaatttc |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43283098 |
aaaatacaaattaaactattccatagttgaagaaccagcaaattgaatttc |
43283148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 43282622 - 43282871
Alignment:
| Q |
17 |
atatataacacaacaaggtaaagagtcaaacaaaaaatatatgcttacatagatttctgcatcatatagaataaaggttgcaaccatttcaaatttcatc |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43282622 |
atatataacacaactaggtaaagagtcaaacaaaaaatatatgcttacatagatttctgcatcatatagaataaaggctgcaaccatttcaaatttcatc |
43282721 |
T |
|
| Q |
117 |
cttacctactaagagaatcgaaattaaactaatctaccaaaaaatatatataattagatagacagataaagagaaacatacaaacatactagtaaaaaat |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43282722 |
cttacctac-aagagaatcgaaattaaactaatctaccaaaaaatatatataattagatagacagataaagagaaacatacaaactaactagtaaaaaat |
43282820 |
T |
|
| Q |
217 |
tatctaaagatgattaataaaattagaagattctattgggggttttagaag |
267 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43282821 |
tatctaaagatgattaataacattagaagattctattgggggttttagaag |
43282871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Original strand, 30678767 - 30678800
Alignment:
| Q |
410 |
aggaggacgaggaggtggagaaccccaaaacaca |
443 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
30678767 |
aggaggacgaggaggtggaggaccccaaaacaca |
30678800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University