View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18831_low_3 (Length: 532)
Name: NF18831_low_3
Description: NF18831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18831_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 116756 - 116510
Alignment:
| Q |
18 |
aatgcttgagatgggcatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgagctcacaagtgta----gaataactcggaa |
113 |
Q |
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| T |
116756 |
aatgcttgagatggacatcgaaatcgattctttcccagtcacgaaaaatggccatggtatcattctctgagcccacaagtgtacgtagaacaactcggaa |
116657 |
T |
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| Q |
114 |
atggaagaaattaatcaagcaggatgggcaatgtaaatccatatcagtcgaataagacttaggtgtttgatatgctagccaccactgagaatccggtctc |
213 |
Q |
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| T |
116656 |
agggaagaaattaatcaagcaggatgagcaatgtaaatccatatcagtcgaataagacttaggtgtttgatatgctagccaccactgagaacctggtctc |
116557 |
T |
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| Q |
214 |
aaaaaacacagtaataagtaattcatcgtctgggttacatgatctgt |
260 |
Q |
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| T |
116556 |
aaaaaacacagtaataagtaattcatcgtctgggttacatgatctgt |
116510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 116333 - 116287
Alignment:
| Q |
290 |
gtggattcctaacagaagaagacatgaatcaaatggtagaattgatt |
336 |
Q |
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| T |
116333 |
gtggatttctaacggaagaagacatgaatcaaatggtagaattgatt |
116287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 116455 - 116423
Alignment:
| Q |
258 |
tgtaggaactcgatacaccaatgacctcagctg |
290 |
Q |
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| T |
116455 |
tgtaggaactcgatacaccaatgacctcagctg |
116423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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