View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18831_low_4 (Length: 398)
Name: NF18831_low_4
Description: NF18831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18831_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 39327484 - 39327867
Alignment:
| Q |
1 |
attaatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttatgtattgttatagatgttaggttataattttta |
100 |
Q |
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| T |
39327484 |
attaatttgtttaagggaataattgaaataacaaaaaaatccagccccaaatcccatatcctctttatatattgttatagatgttaggttataattttta |
39327583 |
T |
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| Q |
101 |
tttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacaaggactaccatgaagaaagaaaattatctttatcttg |
200 |
Q |
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| T |
39327584 |
tttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacagggactaccatgaagaaagaaaattatctttatcttg |
39327683 |
T |
|
| Q |
201 |
aggatgcttcatccattaggtgctatcatctttaacttgttctattttagaacatattttgttttccatgaaataaaacagaaaagggaaaaagaaggga |
300 |
Q |
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| T |
39327684 |
aggatgcttcatccattaggtgctatcatctttaacttgttctattttagaacatattttgttttcaatgaaataaaacagaaaagggaaaaagaaggga |
39327783 |
T |
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| Q |
301 |
gaaatctttgtttcgagctgtgtgcaccttaattttctctttctaattttaagaactaattaccacatatttatagcatgcact |
384 |
Q |
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| T |
39327784 |
gaaatctttgtttcgagctgtgtgcaccttaattttctctttctaattttaagaactaattaccacatatttatagcatgcact |
39327867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 39418747 - 39418876
Alignment:
| Q |
96 |
ttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatg-tacatacaaggactaccatgaagaaagaaaattatcttt |
194 |
Q |
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| T |
39418747 |
ttttatttgttgagtgtttctctttctataatgtgaattattcatttggtttggttgctgatgcatacaaggactaccgcgaagaaagaaatttatcttt |
39418846 |
T |
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| Q |
195 |
atcttgaggatgcttcatccattaggtgcta |
225 |
Q |
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| T |
39418847 |
gtc-tgaggatgcttcatccattaggtgcta |
39418876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 322
Target Start/End: Original strand, 39418996 - 39419095
Alignment:
| Q |
221 |
tgctatcatctttaacttgttctattttagaacatattttgttttccatgaaataaaacagaaaagggaaaaagaagggagaaatctttgtttcgagctg |
320 |
Q |
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| T |
39418996 |
tgctatcatctttaacttgttctctttttaaa-acattttgttttccatgaa-taaaatagtaaatggaaaaagaagtgagaaatctttgtttcaagctg |
39419093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 38004380 - 38004317
Alignment:
| Q |
4 |
aatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttat |
68 |
Q |
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|||||||| |||| ||||||||||||||| ||||||| |||||| ||||| ||||| |||||||| |
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| T |
38004380 |
aatttgttcaagggtataattgaaataac-aaaaaattcagcccaaaatctcatattctctttat |
38004317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 27175170 - 27175119
Alignment:
| Q |
7 |
ttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatat |
59 |
Q |
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|||||||| | |||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
27175170 |
ttgtttaatggtataattggaataac-aaaaaatccagcccaaaatcccatat |
27175119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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