View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18832_high_3 (Length: 429)
Name: NF18832_high_3
Description: NF18832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18832_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 27448402 - 27448807
Alignment:
| Q |
17 |
acaaatagcttttttaattaataaaaatgttagttaattcattgaattaagaaacaagtgcattgatatagttcaatttacaagtgtatcatagaaactc |
116 |
Q |
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| T |
27448402 |
acaaataccttttttaattaataaaaatgttagttaattcattgaattaagaaacaagtgcattgatacagttcaatttacaagtgtattatagaaactc |
27448501 |
T |
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| Q |
117 |
ccctgtaaaaatggtttgtgaggttaatgtgtctattaaactcatataaatatatataccttggaaaatcggtgtgcaagatcnnnnnnnggccatactt |
216 |
Q |
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| T |
27448502 |
ccctataaaaatggtttgtgaggttaatgtgtctattaaactcatataaatatatataccttggaaaatcggtgtgcaagatctttttttggccatactt |
27448601 |
T |
|
| Q |
217 |
tctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaaatttttctgtaaacaagaattgcatatatttttagataagtt |
316 |
Q |
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| T |
27448602 |
tctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaaatttttctgtaaacaagaattgcatatatttttagataagtt |
27448701 |
T |
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| Q |
317 |
ttctaattgttatatatatatgaaataattttgctgtgccgcccaaaccataattaatagaa---agggacgttcctaattataacatagtccttcaatg |
413 |
Q |
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| T |
27448702 |
ttctaattgttatatatatatgaaataattttgctgttccgcccaaaccataattaacagaaagtagggacgttcctaattataacatagtccttcaatg |
27448801 |
T |
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| Q |
414 |
atgatg |
419 |
Q |
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| T |
27448802 |
atgatg |
27448807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 27430570 - 27430702
Alignment:
| Q |
151 |
attaaactcatataaatatatataccttggaaaatcggtgtgcaagatcnnnnnnnggccatactttctccactgatgaccatcttcttcaggctgttca |
250 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||| | ||| |
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| T |
27430570 |
attaaactcgtaaaaatatatataccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattgatgaccatcttccacaggacgatca |
27430669 |
T |
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| Q |
251 |
gactccttctcccatgtttgtgaaatttttctg |
283 |
Q |
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| T |
27430670 |
gactccttctcccatgtttgtgaaacttttctg |
27430702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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