View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18832_low_1 (Length: 724)

Name: NF18832_low_1
Description: NF18832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18832_low_1
NF18832_low_1
[»] chr6 (21 HSPs)
chr6 (193-710)||(31564316-31564843)
chr6 (48-414)||(33385314-33385670)
chr6 (48-414)||(33259583-33259959)
chr6 (451-615)||(33416366-33416536)
chr6 (48-240)||(33416152-33416345)
chr6 (48-233)||(24631975-24632161)
chr6 (1-134)||(31564838-31564964)
chr6 (92-274)||(9165228-9165418)
chr6 (572-701)||(33385707-33385837)
chr6 (285-391)||(24631864-24631970)
chr6 (203-277)||(29274300-29274376)
chr6 (627-686)||(33281320-33281376)
chr6 (1-45)||(33414744-33414788)
chr6 (644-698)||(33416538-33416592)
chr6 (4-45)||(28873045-28873086)
chr6 (627-686)||(33301947-33302003)
chr6 (308-383)||(281808-281881)
chr6 (5-45)||(33293154-33293194)
chr6 (93-134)||(33282241-33282282)
chr6 (93-134)||(33398042-33398083)
chr6 (93-134)||(33408952-33408993)
[»] chr5 (7 HSPs)
chr5 (452-606)||(30653203-30653360)
chr5 (203-325)||(11684346-11684468)
chr5 (279-344)||(30653373-30653438)
chr5 (196-277)||(32059660-32059742)
chr5 (196-240)||(10391269-10391313)
chr5 (333-384)||(11457158-11457209)
chr5 (196-235)||(29115328-29115367)
[»] scaffold0428 (4 HSPs)
scaffold0428 (178-414)||(3802-4047)
scaffold0428 (48-134)||(3704-3791)
scaffold0428 (627-686)||(12876-12932)
scaffold0428 (93-134)||(11970-12011)
[»] chr2 (7 HSPs)
chr2 (569-698)||(17443374-17443503)
chr2 (349-414)||(17443537-17443602)
chr2 (196-277)||(34339039-34339122)
chr2 (1-45)||(17447760-17447805)
chr2 (204-244)||(3102617-3102657)
chr2 (309-386)||(14299588-14299663)
chr2 (216-277)||(7103554-7103615)
[»] chr8 (8 HSPs)
chr8 (308-386)||(13000381-13000457)
chr8 (201-269)||(26717178-26717246)
chr8 (205-291)||(5290566-5290649)
chr8 (196-259)||(26716527-26716590)
chr8 (308-386)||(30191098-30191174)
chr8 (243-329)||(10079082-10079168)
chr8 (280-329)||(30389108-30389157)
chr8 (203-277)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (308-384)||(43115093-43115167)
chr3 (196-274)||(38462197-38462277)
chr3 (203-276)||(22232749-22232824)
chr3 (187-269)||(3015928-3016011)
chr3 (308-386)||(37273171-37273247)
chr3 (311-407)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (271-384)||(3468614-3468725)
chr7 (196-277)||(3610811-3610894)
chr7 (204-325)||(26935573-26935696)
chr7 (162-240)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (206-259)||(44207697-44207750)
chr1 (335-386)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-291)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (205-259)||(32920489-32920543)
chr4 (202-269)||(47970240-47970309)
chr4 (219-289)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 193 - 710
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  193 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 292  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  293 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 392  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  393 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 486  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  487 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  583 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  683 ttcatcttcaacttgtactaccacaggt 710  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 48 - 414
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  48 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 146  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  147 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 244  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  245 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 344  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  345 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 414  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 48 - 414
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  48 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 146  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  147 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 244  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  245 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 337  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  338 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 414  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 451 - 615
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  451 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 548  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  549 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 615  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  48 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 146  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  147 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 240  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 48 - 233
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  48 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 146  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  147 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 233  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 31564964 - 31564838
Alignment:
Q  1 gcggatgagagacccttttttctgaggtatgcttgcgccttttcatgcaagtgttggtgatatagttgctgcaattcaaaggggacagaatagacattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       |||||||||| ||||||||   |||||||||||||    
T  31564964 gcggatgagagacccttttttctgaggtatgcttgcgccttttcatgtaagtgttggt-------ttgctgcaatccaaagggggtggaatagacattta 31564872  T
Q  101 aaaattacaaaccttatgtaagaattcaaagata 134  Q
    |||| || ||| |||||||||||||| |||||||    
T  31564871 aaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 92 - 274
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  92 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 184  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  185 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 274  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  572 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 670  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  671 aattgcaacttcttcatcttcaacttgtact 701  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 285 - 391
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  285 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 384  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  385 ctaatat 391  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  203 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 277  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  627 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 686  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33414744 - 33414788
Alignment:
Q  1 gcggatgagagacccttttttctgaggtatgcttgcgccttttca 45  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  33414744 gcggatgagagaccctttttcctgagatatgcttgcgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 698
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  644 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 698  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 28873086 - 28873045
Alignment:
Q  4 gatgagagacccttttttctgaggtatgcttgcgccttttca 45  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  28873086 gatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 686
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  627 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 686  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  308 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 383  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 33293154 - 33293194
Alignment:
Q  5 atgagagacccttttttctgaggtatgcttgcgccttttca 45  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  33293154 atgagagacccttttttctgaggtatgctttcaccttttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  93 gacatttaaaaattacaaaccttatgtaagaattcaaagata 134  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  93 gacatttaaaaattacaaaccttatgtaagaattcaaagata 134  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  93 gacatttaaaaattacaaaccttatgtaagaattcaaagata 134  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 452 - 606
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  452 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 551  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  552 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 606  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 203 - 325
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  203 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 302  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  303 catacggaaataagctgaaaaca 325  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  279 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 344  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 277  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttata 240  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  333 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 384  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctattt 235  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 178 - 414
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  178 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 274  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  275 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 368  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  369 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 414  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  48 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 134  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 627 - 686
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  627 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 686  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  93 gacatttaaaaattacaaaccttatgtaagaattcaaagata 134  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 569 - 698
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  569 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 668  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  669 gcaattgcaacttcttcatcttcaacttgt 698  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  349 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 414  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 196 - 277
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 277  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17447805 - 17447760
Alignment:
Q  1 gcggatgagagaccc-ttttttctgaggtatgcttgcgccttttca 45  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  17447805 gcggatgagagaccccttttttctgaggtatgcttgcgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  204 ttatcataaaattgcttatgtataagctatttttatagcaa 244  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 386
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  309 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 386  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  216 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 277  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  308 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 386  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  201 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 269  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  205 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 291  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 259  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  308 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 386  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  243 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 329  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  280 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 329  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  203 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 277  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 308 - 384
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  308 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 384  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 274  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 203 - 276
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  203 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 276  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  187 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 269  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  308 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 386  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  311 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 407  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  271 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 370  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  371 cagtctcacaagtg 384  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  196 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 277  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 325
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  204 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 301  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  302 acatacggaaataagctgaaaaca 325  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  162 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 240  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  206 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 259  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 335 - 386
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  335 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 386  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  218 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 291  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 205 - 259
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  205 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 259  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  202 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 269  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  219 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 289  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

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