View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18832_low_4 (Length: 396)
Name: NF18832_low_4
Description: NF18832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18832_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 41539901 - 41540279
Alignment:
| Q |
1 |
tcatagtaaggtatatacacttatgccatgtagtgttataaaccggttaataatgtcatcatccattgttaacttcctaactgtgtagctgcgccaatta |
100 |
Q |
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| T |
41539901 |
tcatagtaaggtatatacacttatgccatgtagtgttataaaccggttaataatgtcatcatccattgttaacttcctaactgtgtagctacgccaatta |
41540000 |
T |
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| Q |
101 |
cgatacagatttgaatcgctcacttcaaccttgaacaacattcgttgatcaacaaacatatcgagctccggtggaatctcagcagagtttttctatacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41540001 |
cgatacagatttgaatcgctcacttcaaccttgaacaacattcgttgatcaacaaacatattgagctccggtggaatctcagcagagtttttctatacaa |
41540100 |
T |
|
| Q |
201 |
agcaagacgtgaattttaataacaggagcacattttaacttatacaatatcaacttagactaatatcgcatcattttagttctatctaacctcagtcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41540101 |
agcaagacgtgaattttaataacaggagcacattttaacttataaaatatcaacttagactaatatcgcatcattttagttctatctaacctcagtcata |
41540200 |
T |
|
| Q |
301 |
gcatcaagaaaatattgtgcagatttgcccacagcctgtgtcacaacaaggtcatacagaacaaatgtggttgaccctg |
379 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41540201 |
gcatgaagaaaatattgtgcagatttgcccacagcctgtgtcacaacacggtcatacagaacaaatgtggttgaccctg |
41540279 |
T |
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