View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18832_low_6 (Length: 293)

Name: NF18832_low_6
Description: NF18832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18832_low_6
NF18832_low_6
[»] chr8 (2 HSPs)
chr8 (1-199)||(17126161-17126359)
chr8 (67-200)||(24969433-24969566)
[»] chr2 (2 HSPs)
chr2 (1-104)||(27402374-27402477)
chr2 (161-199)||(27402525-27402563)
[»] chr3 (2 HSPs)
chr3 (25-195)||(12794070-12794239)
chr3 (65-110)||(15046531-15046576)
[»] chr5 (1 HSPs)
chr5 (67-191)||(10178100-10178224)
[»] scaffold0959 (1 HSPs)
scaffold0959 (67-189)||(540-661)
[»] chr6 (3 HSPs)
chr6 (77-135)||(14797149-14797207)
chr6 (25-91)||(19978125-19978190)
chr6 (154-196)||(14567802-14567844)
[»] scaffold0135 (1 HSPs)
scaffold0135 (148-189)||(31331-31372)
[»] chr4 (1 HSPs)
chr4 (148-189)||(9220680-9220721)
[»] scaffold0111 (1 HSPs)
scaffold0111 (67-110)||(31561-31604)
[»] chr1 (2 HSPs)
chr1 (51-110)||(30822076-30822135)
chr1 (160-195)||(35565506-35565541)
[»] chr7 (1 HSPs)
chr7 (95-199)||(15010343-15010447)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17126161 - 17126359
Alignment:
Q  1 ctagtcgtctcctatggatacaggatatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatg 100  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17126161 ctagtcgtcacctatggatacaagatatcctaatcgtcttcattgaataaaaatatcatacttgacacttatgaaggcatgaacatatgactcaataatg 17126260  T
Q  101 catatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 199  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17126261 catatgttcacccactaaattgttatcattaacatcgtcaccttttgtacatgcattcgtcatcaatatcgtcgtcattttgcatgtaagaattcgtca 17126359  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 24969433 - 24969566
Alignment:
Q  67 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 166  Q
    ||||| ||| |||||||||||||||||||||||||||| ||||| | |  |||||||  |||||  | || |||  |||  ||||| ||||| ||| |||    
T  24969433 acttatgaatgcatgaacatatgactcaataatgcatacgttcaacaaacaaatcgtcgtcattttcgtcttcatttttcatacatgcattcatcaacaa 24969532  T
Q  167 tatcgtcgtcattttgcatgtaagaattcgtcaa 200  Q
    || |||||||||||||||| ||||||||| ||||    
T  24969533 taacgtcgtcattttgcatataagaattcatcaa 24969566  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27402374 - 27402477
Alignment:
Q  1 ctagtcgtctcctatggatacaggatatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatg 100  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||| |||||||||    
T  27402374 ctagtcgtcgcctctggatacaaagtatcctaatcgtcttcattggatataaatatcctacttgacacttactaatgcatgaacatatgattcaataatg 27402473  T
Q  101 cata 104  Q
    ||||    
T  27402474 cata 27402477  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 27402525 - 27402563
Alignment:
Q  161 catcaatatcgtcgtcattttgcatgtaagaattcgtca 199  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  27402525 catcaatatcgtcaccattttgcatgtaagaattcgtca 27402563  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 12794070 - 12794239
Alignment:
Q  25 atatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgtt 124  Q
    |||||||| |||| ||||||| ||| ||| ||||||||||||||||| |  | |||||||||||||||||| |||||| ||||||| | || |||||||     
T  12794070 atatcctagtcgtattcattggatataaacatcctacttgacacttatgttg-catgaacatatgactcaacaatgcacatgttcaacaacaaaatcgtc 12794168  T
Q  125 atcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaattc 195  Q
    ||||||  | |  |||  |||  ||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  12794169 atcattttcgtattcatttttcatacatgcattcatcatcaatatcgtcgtcattttgcatgtaataattc 12794239  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 15046576 - 15046531
Alignment:
Q  65 acacttacgaaggcatgaacatatgactcaataatgcatatgttca 110  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  15046576 acacttatgaatgcatgaacatatgactcaacaatgcatatgttca 15046531  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 191
Target Start/End: Complemental strand, 10178224 - 10178100
Alignment:
Q  67 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 166  Q
    ||||| ||| ||||||||||||||||||| |||||||| ||||| |    || |||| ||||||  | || |||  |||| ||||| ||||| |||||||    
T  10178224 acttatgaatgcatgaacatatgactcaacaatgcatacgttcaacatacaattcgtcatcattttcgtcttcattttttatacatgcattcatcatcaa 10178125  T
Q  167 tatcgtcgtcattttgcatgtaaga 191  Q
    || | ||||||||||||||||||||    
T  10178124 taacatcgtcattttgcatgtaaga 10178100  T

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Target: scaffold0959 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 540 - 661
Alignment:
Q  67 acttacgaaggcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaa 166  Q
    ||||| ||| ||||||| ||| ||||||| |||||||| ||||| | | |||||||| |||||| || || |||  |||  ||||| ||||| |||||||    
T  540 acttatgaatgcatgaatataagactcaacaatgcataagttcaacaa-taaatcgtcatcatttacgtcttcatttttcatacatgcattcatcatcaa 638  T
Q  167 tatcgtcgtcattttgcatgtaa 189  Q
     | ||||||||||||||||||||    
T  639 caacgtcgtcattttgcatgtaa 661  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 14797149 - 14797207
Alignment:
Q  77 gcatgaacatatgactcaataatgcatatgttcacccactaaatcgttatcattaacat 135  Q
    |||||||||||||||||||||||||||| |||||| ||  || |||| |||||||||||    
T  14797149 gcatgaacatatgactcaataatgcatacgttcacacaacaagtcgtcatcattaacat 14797207  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 19978190 - 19978125
Alignment:
Q  25 atatcctaatcgtcttcattgaataaaaatatcctacttgacacttacgaaggcatgaacatatgac 91  Q
    |||||||| |||||||||||| ||| |||||||||||||| ||||| || | |||||||||||||||    
T  19978190 atatcctagtcgtcttcattggatataaatatcctacttgtcacttccg-atgcatgaacatatgac 19978125  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 14567844 - 14567802
Alignment:
Q  154 cattcgtcatcaatatcgtcgtcattttgcatgtaagaattcg 196  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||    
T  14567844 cattcgtcatcaatatcatcgtcattttgcacgtaataattcg 14567802  T

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Target: scaffold0135 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 31331 - 31372
Alignment:
Q  148 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 189  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  31331 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 31372  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 9220680 - 9220721
Alignment:
Q  148 tacatacattcgtcatcaatatcgtcgtcattttgcatgtaa 189  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  9220680 tacatgcattcgtcatcaataacgtcgtcattttgcatgtaa 9220721  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 31604 - 31561
Alignment:
Q  67 acttacgaaggcatgaacatatgactcaataatgcatatgttca 110  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||    
T  31604 acttatgaatgcatgaacatatgactcaataatgcatacgttca 31561  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 30822076 - 30822135
Alignment:
Q  51 aaatatcctacttgacacttacgaaggcatgaacatatgactcaataatgcatatgttca 110  Q
    |||||||| |||  ||| ||| ||| |||||||||||||||||||||||||||| |||||    
T  30822076 aaatatccgactcaacatttatgaatgcatgaacatatgactcaataatgcatacgttca 30822135  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 35565506 - 35565541
Alignment:
Q  160 tcatcaatatcgtcgtcattttgcatgtaagaattc 195  Q
    |||||||||||||||||||||||||||||| |||||    
T  35565506 tcatcaatatcgtcgtcattttgcatgtaataattc 35565541  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 15010447 - 15010343
Alignment:
Q  95 ataatgcatatgttcacccactaaatcgttatcattaacatcgtcaccttttgtacatacattcgtcatcaatatcgtcgtcattttgcatgtaagaatt 194  Q
    |||||||||  ||||||| |  ||||| | ||||||||||||||||| || | || ||   ||| |||||||||||||||||  ||||||||||| || |    
T  15010447 ataatgcatccgttcacctaacaaatcatcatcattaacatcgtcactttctataaatgtgttcatcatcaatatcgtcgtctctttgcatgtaataact 15010348  T
Q  195 cgtca 199  Q
    |||||    
T  15010347 cgtca 15010343  T

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