View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_high_1 (Length: 516)
Name: NF18833_high_1
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_high_1 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 1458928 - 1458426
Alignment:
| Q |
14 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
113 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1458928 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
1458829 |
T |
|
| Q |
114 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagatt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1458828 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccagatt |
1458729 |
T |
|
| Q |
214 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccagtcatcaaactgtaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
1458728 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccagtcaacaaactgtaa |
1458629 |
T |
|
| Q |
314 |
ctgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgttta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458628 |
ctgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgttta |
1458529 |
T |
|
| Q |
414 |
gagaaccctacaatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtactagagggagaccttg |
513 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458528 |
gagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtactagagggagaccttg |
1458429 |
T |
|
| Q |
514 |
aga |
516 |
Q |
| |
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||| |
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| T |
1458428 |
aga |
1458426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Complemental strand, 2428635 - 2428133
Alignment:
| Q |
14 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctca |
113 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2428635 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctca |
2428536 |
T |
|
| Q |
114 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2428535 |
attttgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagatt |
2428436 |
T |
|
| Q |
214 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgctgttaaagtgacatattgatccagtcatcaaactgtaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
2428435 |
ctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagtagctgccgttaaagtgacatattgatccagtcaacaaactgtaa |
2428336 |
T |
|
| Q |
314 |
ctgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgttta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428335 |
ctgtaacttcattattgttacttagtttatggctaacaatttatagttgattcaagatcactttgaatcactctattgcaattcatttgtaatctgttta |
2428236 |
T |
|
| Q |
414 |
gagaaccctacaatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtactagagggagaccttg |
513 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428235 |
gagaaccctaccatccactcgcgaggggatcatttaaagccagagcaagaagactcggtatggactagcccaacgaaattggtactagagggagaccttg |
2428136 |
T |
|
| Q |
514 |
aga |
516 |
Q |
| |
|
||| |
|
|
| T |
2428135 |
aga |
2428133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 14 - 270
Target Start/End: Complemental strand, 2431613 - 2431358
Alignment:
| Q |
14 |
atggcagaaaactacgcaactaacatcgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgcatgct |
111 |
Q |
| |
|
|||| |||||||||||| | ||| ||| ||| ||||||||||||||||| |||| || ||||| || | || ||||||||||||||||| |||| |
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|
| T |
2431613 |
atggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
2431514 |
T |
|
| Q |
112 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccaga |
211 |
Q |
| |
|
|||||||| | | || || || |||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
2431513 |
caattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
2431417 |
T |
|
| Q |
212 |
ttctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagta |
270 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||| |
|
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| T |
2431416 |
ttctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagta |
2431358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 67 - 273
Target Start/End: Complemental strand, 2434943 - 2434740
Alignment:
| Q |
67 |
taccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagt |
166 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || || || ||| |||||||||||||||||||||||||| |
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|
| T |
2434943 |
taccaagaattccggtataataggaaagtgggacatcattgtgctcaattttgaaaa---ttccagttgtaggaaccaaactatactcttcccatttagt |
2434847 |
T |
|
| Q |
167 |
cattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagtt |
266 |
Q |
| |
|
| | ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||| |
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|
| T |
2434846 |
aagactccaaactgaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagtt |
2434747 |
T |
|
| Q |
267 |
agtagct |
273 |
Q |
| |
|
||||||| |
|
|
| T |
2434746 |
agtagct |
2434740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 2498021 - 2498204
Alignment:
| Q |
46 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
145 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || ||||||||| |
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|
| T |
2498021 |
aaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
2498120 |
T |
|
| Q |
146 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
229 |
Q |
| |
|
|| ||||||||||||||| | |||||||||||||||| ||| |||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
2498121 |
gctgtactcttcccatttacagaatccccaaactaaatcaccttccttataatcaggatgtcctgattcaaggactttagacac |
2498204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 2517831 - 2518014
Alignment:
| Q |
46 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
145 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| || ||||||||||||||||||||||||||||||| ||| |
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|
| T |
2517831 |
aaattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaa |
2517930 |
T |
|
| Q |
146 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
229 |
Q |
| |
|
|| ||||||||||| ||||| | ||||| ||||||||| ||| |||||||| | ||||||||||| |||||||||||||| |
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|
| T |
2517931 |
gctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
2518014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 62 - 229
Target Start/End: Original strand, 2506970 - 2507137
Alignment:
| Q |
62 |
atacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccat |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| | |||||||||||||||| ||||||| || ||||||| ||| || ||||||||||| |
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|
| T |
2506970 |
atacatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttgtgccgcagggatcaagctgtactcttcccaa |
2507069 |
T |
|
| Q |
162 |
ttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
229 |
Q |
| |
|
||||| || ||||| |||| |||| ||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
2507070 |
ttagttatcccccacactatatcaccttccttataatctttgtgtccagattccacaactttagacac |
2507137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 46 - 229
Target Start/End: Original strand, 2513614 - 2513797
Alignment:
| Q |
46 |
aaattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgcatgctcaattttgaaaagtatttgagctgcagggaccaa |
145 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| |||||||||||||| || ||||| | ||||||||||| ||| ||||||| |||||||||| ||| |
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|
| T |
2513614 |
aaattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttgtgctgcagggatcaa |
2513713 |
T |
|
| Q |
146 |
actatactcttcccatttagtcattccccaaactaaatcatctttcttataatttggatgtccagattctacaactttagacac |
229 |
Q |
| |
|
|| ||||||||||| ||||| || ||||| || | |||| ||| ||||||| | ||||||||||||| |||||||||||| |
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| T |
2513714 |
gctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacac |
2513797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 50703468 - 50703557
Alignment:
| Q |
108 |
tgctcaattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataat |
198 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||| || ||||||||||||||| | |||||||||| ||||| ||| |||||||| |
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| T |
50703468 |
tgctcaattttgaaaagtatttgagat-aaggtaccaagctgtactcttcccatttacagaatccccaaacttaatcaccttccttataat |
50703557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 506
Target Start/End: Complemental strand, 1191637 - 1191580
Alignment:
| Q |
446 |
tttaaagccagagcaagaagactcggtatggact-agcccaacgaaattggtactagaggga |
506 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
1191637 |
tttaaagccagagcaa----actctgtatggacttagcccaccgaaattggtactagaggga |
1191580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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