View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_high_3 (Length: 491)
Name: NF18833_high_3
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Original strand, 36319909 - 36320368
Alignment:
| Q |
14 |
agaatgcaaccaatatcacagttacagttaaccgagttcctttgatttgtaaaagtattgcaagtatcacatattatcatgaaaaaggaaacatagcacc |
113 |
Q |
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| T |
36319909 |
agaatgcaaccaatatcacagttacagttaaccgagttcctttgatttgtaaaaatattgcaagtatcacatattatcatgaaaaaggaaacatagcacc |
36320008 |
T |
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| Q |
114 |
atacaaagagaagggaccctttaaaaattatttagcataatcatggaaccagttaccaccttagttctagaaacaagcaacaccaagctgtatgtataag |
213 |
Q |
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| T |
36320009 |
atacaaagagaagtgaccctttaaaaattatttagcataatcatggaaccagttaccaccttagttctagaaacaagcaacaccaagctgtatgtataag |
36320108 |
T |
|
| Q |
214 |
caattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgatgcctactcagctttagggt |
313 |
Q |
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| T |
36320109 |
caattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgatgcctactcagctttagggt |
36320208 |
T |
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| Q |
314 |
aacaacctcctgttctcaagtgaaaataagaccataaataatattaaccatgataacatccaattcaagctaatgaaaaaacagaacactggttagaatg |
413 |
Q |
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| T |
36320209 |
gacaacctcctgttctcaagtgaaaataagaccataaataatattaaccatgataacatccaattcaagctaatgaaaaaacagaacactggttagaatg |
36320308 |
T |
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| Q |
414 |
gagttgaagtgttcaagcataataacattatatctgtagtgtatactcaaatgaaagact |
473 |
Q |
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| T |
36320309 |
gagttgaagtgttcaagcataataacattatatctgtagtgtatactcaaatgaaagact |
36320368 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 13973132 - 13973027
Alignment:
| Q |
200 |
gctgtatgtataagcaattgcttcgtaatttgcaggcatattttcaggagaggtagactgtgcccaaattgatgatactaatcggcttatctgatgccta |
299 |
Q |
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|||||| |||| ||||||||||||| ||||| |||| |||| |||| || |||||||| ||||||||||||||| || || | |||||||| ||| |
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| T |
13973132 |
gctgtaggtatgagcaattgcttcgaaattttcaggtgtattcaaaggatagatagactgtacccaaattgatgatagcaaaagggtaatctgatgacta |
13973033 |
T |
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| Q |
300 |
ctcagc |
305 |
Q |
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| T |
13973032 |
ctcagc |
13973027 |
T |
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