View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_10 (Length: 282)
Name: NF18833_low_10
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 43174710 - 43174457
Alignment:
| Q |
11 |
agaatatacacgagtgtctgtggcccctgtaaaatatataaccattttgttcagacccgaatgctcaacttcttccatctaaattttaaacaatcgcaac |
110 |
Q |
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| T |
43174710 |
agaaaatacacgagtgtctgtggcccctgtaaaatatataaccattttgttcagacccgaatgctcaacttcttccatctaaattttaaacaatcgcaac |
43174611 |
T |
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| Q |
111 |
aacatatgaaaagtttattaaagttagaacaggggttgattgatttgttgatatatacacattttattctgtcacaatgaaagctgttcatccagcaggc |
210 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43174610 |
aacatatgaaaagtctattaaagttagaacaggggttgattgatttgttgatatatacacattttattctgtcacaatgaaagctgttcatccagcaggc |
43174511 |
T |
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| Q |
211 |
taggaaggtaaagtttaatgtagtaactacagtagtccttttgtttggtacata |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43174510 |
taggaaggtaaagtttaatgtagtaactacagtagtccttttgtttggtacata |
43174457 |
T |
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