View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18833_low_13 (Length: 258)
Name: NF18833_low_13
Description: NF18833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18833_low_13 |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 34593067 - 34593298
Alignment:
| Q |
19 |
acattagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaatgattaaataaaatcaaatgtgttggtgtcg |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34593067 |
acataagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaatgattaaataaaatcaaatgtgttggtgtcg |
34593166 |
T |
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| Q |
119 |
ggcatcaacccgtgagatagtatggtagggatggtgtatggnnnnnnnnataagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
34593167 |
ggcatcaacccgtgagatagtatggtagggatagtgtat-gttttttttataagccaggagataggacagatatcaagaggaaacaccgacatctcaact |
34593265 |
T |
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| Q |
219 |
ggttgctggcacctcggagaacttccatcctct |
251 |
Q |
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| T |
34593266 |
ggttgctggcacctcggagaacttccatcctct |
34593298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 2583065 - 2583114
Alignment:
| Q |
169 |
taagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
2583065 |
taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaact |
2583114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 24123016 - 24122981
Alignment:
| Q |
183 |
ggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
24123016 |
ggacagacatcaagaggaaacaccgacatctcaact |
24122981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 25538894 - 25538842
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaactgg |
220 |
Q |
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| T |
25538894 |
ataagtcaggagataggacatgcatcaagaggaaacaccgacattccaactgg |
25538842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 14315 - 14365
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
14315 |
ataagcaaggagagaggacagacatcaagaggcatcatcgacatcccaact |
14365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 20589726 - 20589647
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcct |
249 |
Q |
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| T |
20589726 |
ataaaccaggagaaaggacaggcatcaagagggacctccgacatctcaactag--gttggcaccccggagaacctccatcct |
20589647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 16038050 - 16038000
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
16038050 |
ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaact |
16038000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 16053546 - 16053496
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
16053546 |
ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaact |
16053496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 20477518 - 20477468
Alignment:
| Q |
168 |
ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact |
218 |
Q |
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| T |
20477518 |
ataagcaaggagaaaggacagacatcaagaggcatcatcgacatcccaact |
20477468 |
T |
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